Wall clock time and date at job start Mon Mar 30 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34328 * 126.44610 * 2 1 4 4 N 1.34478 * 107.67178 * 180.02562 * 3 2 1 5 5 C 1.30251 * 108.70014 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.62092 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47370 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47275 * 300.02409 * 6 5 4 9 9 H 1.08002 * 119.99701 * 94.82057 * 8 6 5 10 10 C 1.37871 * 120.00047 * 274.82437 * 8 6 5 11 11 N 1.31521 * 120.00050 * 6.45476 * 10 8 6 12 12 Si 1.86806 * 119.99988 * 186.45471 * 10 8 6 13 13 H 1.48495 * 109.46963 * 179.97438 * 12 10 8 14 14 H 1.48498 * 109.46940 * 300.00037 * 12 10 8 15 15 H 1.48503 * 109.46978 * 60.00146 * 12 10 8 16 16 C 1.53004 * 109.47006 * 60.02584 * 6 5 4 17 17 N 1.46898 * 109.47161 * 65.29962 * 16 6 5 18 18 O 1.33971 * 108.76041 * 0.22347 * 5 4 3 19 19 H 1.09001 * 109.47128 * 89.96877 * 1 2 3 20 20 H 1.09001 * 109.46984 * 209.96942 * 1 2 3 21 21 H 1.08997 * 109.46839 * 329.96836 * 1 2 3 22 22 H 1.08001 * 126.16243 * 0.06605 * 3 2 1 23 23 H 0.96996 * 119.99729 * 355.08661 * 11 10 8 24 24 H 1.08998 * 109.47313 * 185.30310 * 16 6 5 25 25 H 1.09007 * 109.46860 * 305.30112 * 16 6 5 26 26 H 1.00898 * 110.99906 * 56.05316 * 17 16 6 27 27 H 1.00901 * 110.99868 * 180.02562 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6477 -0.0006 5 6 3.5765 -0.6548 -0.0015 6 6 4.8004 -1.5340 -0.0029 7 1 4.4959 -2.5807 -0.0039 8 6 5.6224 -1.2490 -1.2334 9 1 6.4406 -0.5457 -1.1852 10 6 5.3298 -1.8859 -2.4207 11 7 4.2589 -2.6437 -2.5139 12 14 6.4544 -1.6725 -3.8969 13 1 5.9231 -2.4556 -5.0412 14 1 6.5184 -0.2357 -4.2668 15 1 7.8161 -2.1570 -3.5559 16 6 5.6359 -1.2472 1.2464 17 7 4.8810 -1.6444 2.4422 18 8 2.3074 -1.0840 -0.0064 19 1 -0.3633 0.0006 -1.0277 20 1 -0.3633 -0.8903 0.5134 21 1 -0.3633 0.8897 0.5143 22 1 1.9822 2.1112 0.0010 23 1 3.7142 -2.8121 -1.7292 24 1 6.5662 -1.8132 1.1992 25 1 5.8610 -0.1818 1.2961 26 1 4.6044 -2.6134 2.3899 27 1 5.4118 -1.4644 3.2813 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259966241.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:22 Heat of formation + Delta-G solvation = -22.557304 kcal Electronic energy + Delta-G solvation = -12489.075719 eV Core-core repulsion = 10246.800639 eV Total energy + Delta-G solvation = -2242.275081 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.95715 -37.50171 -35.33313 -34.70787 -33.13632 -30.67023 -27.12092 -25.75251 -24.08121 -22.42085 -21.58185 -19.19488 -17.92138 -17.35273 -16.46772 -15.95611 -15.70535 -15.58392 -14.85478 -14.31260 -13.93221 -13.79315 -13.49921 -13.31151 -13.08150 -12.58958 -12.05187 -12.01021 -11.79401 -11.17291 -11.00306 -10.69666 -9.64949 -9.26807 -8.76291 -6.52344 0.80550 1.52237 1.58627 1.79621 2.05608 2.08239 2.51821 3.07560 3.60590 3.77486 4.03367 4.23221 4.25901 4.44050 4.59158 4.67936 4.75286 4.89645 5.14903 5.29651 5.40608 5.64639 5.76870 6.07216 6.18714 6.41031 6.63100 7.16509 7.28901 8.61149 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.031759 B = 0.013987 C = 0.011207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.435037 B = 2001.334173 C = 2497.773438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.097 4.097 3 C -0.068 4.068 4 N -0.530 5.530 5 C 0.239 3.761 6 C 0.114 3.886 7 H 0.033 0.967 8 C -0.594 4.594 9 H 0.059 0.941 10 C -0.025 4.025 11 N -0.921 5.921 12 Si 1.118 2.882 13 H -0.283 1.283 14 H -0.278 1.278 15 H -0.257 1.257 16 C 0.096 3.904 17 N -0.856 5.856 18 O -0.233 6.233 19 H 0.085 0.915 20 H 0.078 0.922 21 H 0.117 0.883 22 H 0.202 0.798 23 H 0.258 0.742 24 H 0.044 0.956 25 H 0.059 0.941 26 H 0.342 0.658 27 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.264 2.795 5.541 7.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.149 4.149 3 C -0.205 4.205 4 N -0.259 5.259 5 C 0.032 3.968 6 C 0.093 3.907 7 H 0.051 0.949 8 C -0.632 4.632 9 H 0.077 0.923 10 C -0.225 4.225 11 N -0.556 5.556 12 Si 0.938 3.062 13 H -0.208 1.208 14 H -0.204 1.204 15 H -0.181 1.181 16 C -0.035 4.035 17 N -0.388 5.388 18 O -0.122 6.122 19 H 0.104 0.896 20 H 0.097 0.903 21 H 0.135 0.865 22 H 0.219 0.781 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.154 0.846 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.088 3.288 3.745 5.863 hybrid contribution -0.192 -0.607 1.704 1.820 sum -3.280 2.680 5.450 6.902 Atomic orbital electron populations 1.20331 0.81140 1.05328 1.04159 1.24236 0.96851 0.84563 1.09270 1.23510 0.88033 1.01267 1.07701 1.70260 1.23580 1.10243 1.21831 1.27926 0.83615 0.91115 0.94100 1.17671 0.85073 0.91863 0.96085 0.94905 1.22015 1.16617 1.28389 0.96179 0.92277 1.27481 0.97849 0.92717 1.04453 1.70909 1.14146 1.38309 1.32242 0.82938 0.74418 0.76840 0.72000 1.20804 1.20383 1.18144 1.21526 0.93873 1.00050 0.88082 1.58666 1.48274 1.27318 1.04500 1.84418 1.19149 1.38158 1.70471 0.89640 0.90276 0.86486 0.78111 0.93135 0.93823 0.92207 0.84560 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.41 10.43 71.24 0.74 -0.66 15 2 C -0.10 -3.96 7.39 24.79 0.18 -3.77 15 3 C -0.07 -2.87 11.80 83.39 0.98 -1.89 15 4 N -0.53 -27.22 11.29 -303.83 -3.43 -30.65 15 5 C 0.24 12.57 6.36 88.34 0.56 13.13 15 6 C 0.11 5.88 2.02 -12.28 -0.02 5.86 15 7 H 0.03 1.80 6.97 -2.38 -0.02 1.78 15 8 C -0.59 -33.41 8.29 25.60 0.21 -33.20 15 9 H 0.06 3.30 7.82 -2.91 -0.02 3.28 15 10 C -0.02 -1.41 5.45 84.65 0.46 -0.95 15 11 N -0.92 -56.10 13.63 21.45 0.29 -55.80 15 12 Si 1.12 49.80 29.91 68.60 2.05 51.85 15 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 14 H -0.28 -11.97 7.11 99.48 0.71 -11.27 15 15 H -0.26 -10.28 7.11 99.48 0.71 -9.57 15 16 C 0.10 4.09 6.14 86.30 0.53 4.62 15 17 N -0.86 -30.48 9.35 -186.71 -1.75 -32.22 15 18 O -0.23 -11.74 10.78 -3.76 -0.04 -11.78 15 19 H 0.09 2.08 8.14 -2.39 -0.02 2.06 15 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.20 6.62 8.06 -2.91 -0.02 6.59 15 23 H 0.26 16.07 6.62 -92.71 -0.61 15.46 15 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.06 2.69 8.14 -2.38 -0.02 2.67 15 26 H 0.34 11.39 8.99 -89.70 -0.81 10.59 15 27 H 0.35 9.98 9.08 -89.69 -0.81 9.17 15 Total: -1.00 -71.21 242.40 0.50 -70.70 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: -0.27 Total: 24.77 kcal Atomic # 6 Polarization: -20.51 SS G_CDS: 3.65 Total: -16.86 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -4.88 Total: -118.68 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.04 Total: -11.78 kcal Atomic # 14 Polarization: 49.80 SS G_CDS: 2.05 Total: 51.85 kcal Total: -71.21 0.50 -70.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259966241.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.146 kcal (2) G-P(sol) polarization free energy of solvation -71.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds