Wall clock time and date at job start Mon Mar 30 2020 02:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30258 * 125.62090 * 2 1 4 4 C 1.34477 * 108.69801 * 179.77969 * 3 2 1 5 5 C 1.34327 * 107.67384 * 0.39587 * 4 3 2 6 6 C 1.50700 * 126.44651 * 179.87662 * 5 4 3 7 7 H 1.08995 * 109.47315 * 359.71041 * 6 5 4 8 8 C 1.50700 * 109.47028 * 239.71231 * 6 5 4 9 9 H 1.08003 * 119.99824 * 265.99039 * 8 6 5 10 10 C 1.37870 * 120.00059 * 85.99447 * 8 6 5 11 11 N 1.31510 * 120.00478 * 5.38585 * 10 8 6 12 12 Si 1.86806 * 120.00000 * 185.39135 * 10 8 6 13 13 H 1.48494 * 109.47421 * 89.99440 * 12 10 8 14 14 H 1.48498 * 109.47368 * 209.99742 * 12 10 8 15 15 H 1.48507 * 109.46953 * 329.99523 * 12 10 8 16 16 C 1.53005 * 109.47178 * 119.71001 * 6 5 4 17 17 N 1.46894 * 109.47071 * 185.42178 * 16 6 5 18 18 O 1.33979 * 125.61998 * 180.02562 * 2 1 3 19 19 H 1.09002 * 109.46843 * 269.97509 * 1 2 3 20 20 H 1.08999 * 109.47273 * 29.96925 * 1 2 3 21 21 H 1.09003 * 109.47492 * 149.97493 * 1 2 3 22 22 H 1.08004 * 126.16170 * 180.26970 * 4 3 2 23 23 H 0.96993 * 120.00476 * 180.02562 * 11 10 8 24 24 H 1.09001 * 109.46948 * 305.42083 * 16 6 5 25 25 H 1.09001 * 109.46602 * 65.42242 * 16 6 5 26 26 H 1.00897 * 110.99998 * 174.11417 * 17 16 6 27 27 H 1.00900 * 111.00539 * 298.07463 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5521 0.6674 0.0049 5 6 3.5698 -0.6757 -0.0009 6 6 4.7937 -1.5550 -0.0010 7 1 5.6883 -0.9324 -0.0009 8 6 4.7872 -2.4247 -1.2317 9 1 4.3698 -3.4198 -1.1875 10 6 5.3141 -1.9501 -2.4141 11 7 5.9171 -0.7817 -2.4432 12 14 5.1715 -2.9665 -3.9749 13 1 3.9143 -2.6139 -4.6821 14 1 6.3318 -2.6840 -4.8574 15 1 5.1549 -4.4099 -3.6258 16 6 4.7870 -2.4386 1.2480 17 7 6.0408 -3.2011 1.3151 18 8 2.2873 -1.0891 -0.0005 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3634 0.8902 -0.5133 21 1 -0.3634 -0.8898 -0.5142 22 1 4.4156 1.3161 0.0102 23 1 6.2875 -0.4476 -3.2750 24 1 4.6946 -1.8125 2.1355 25 1 3.9443 -3.1284 1.2005 26 1 6.1030 -3.7194 2.1785 27 1 6.1350 -3.8131 0.5184 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983085.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:53 Heat of formation + Delta-G solvation = -16.435104 kcal Electronic energy + Delta-G solvation = -12402.426701 eV Core-core repulsion = 10160.417099 eV Total energy + Delta-G solvation = -2242.009602 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.98557 -37.19614 -35.44612 -34.33100 -32.98641 -30.76064 -27.57058 -26.15144 -23.21910 -22.63657 -21.37107 -18.79220 -17.49723 -17.44832 -16.68227 -16.42570 -15.81615 -14.84102 -14.64426 -14.39466 -13.79755 -13.64613 -13.45882 -13.13319 -13.06770 -12.77188 -12.42374 -12.04150 -11.73065 -11.49383 -11.17050 -10.69806 -9.46782 -9.24487 -8.22844 -6.35376 0.83888 1.37838 1.39524 1.49049 1.91893 2.07928 2.36746 3.09319 3.40980 3.91114 4.32208 4.40224 4.48707 4.59946 4.70240 4.78958 4.89890 4.96606 5.10407 5.34835 5.52675 5.66429 5.71743 6.10129 6.41728 6.74833 6.86970 6.99298 7.33038 8.84287 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.014237 C = 0.011474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.292356 B = 1966.197172 C = 2439.643207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C 0.140 3.860 3 N -0.508 5.508 4 C -0.098 4.098 5 C 0.015 3.985 6 C 0.111 3.889 7 H 0.064 0.936 8 C -0.523 4.523 9 H 0.058 0.942 10 C 0.023 3.977 11 N -0.907 5.907 12 Si 0.955 3.045 13 H -0.285 1.285 14 H -0.281 1.281 15 H -0.259 1.259 16 C 0.088 3.912 17 N -0.844 5.844 18 O -0.214 6.214 19 H 0.110 0.890 20 H 0.106 0.894 21 H 0.099 0.901 22 H 0.169 0.831 23 H 0.265 0.735 24 H 0.056 0.944 25 H 0.015 0.985 26 H 0.344 0.656 27 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 -2.819 4.477 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.067 4.067 3 N -0.239 5.239 4 C -0.234 4.234 5 C -0.039 4.039 6 C 0.092 3.908 7 H 0.082 0.918 8 C -0.561 4.561 9 H 0.076 0.924 10 C -0.179 4.179 11 N -0.544 5.544 12 Si 0.780 3.220 13 H -0.211 1.211 14 H -0.206 1.206 15 H -0.183 1.183 16 C -0.044 4.044 17 N -0.375 5.375 18 O -0.102 6.102 19 H 0.129 0.871 20 H 0.124 0.876 21 H 0.117 0.883 22 H 0.186 0.814 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.157 0.843 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.953 -1.416 4.333 8.314 hybrid contribution -0.030 -1.497 -1.052 1.830 sum -6.984 -2.913 3.280 8.247 Atomic orbital electron populations 1.20385 0.78060 1.05792 1.05864 1.27303 0.98255 0.78683 1.02426 1.70214 1.02387 1.31628 1.19688 1.22871 0.94624 0.93890 1.12038 1.24967 0.83822 0.95829 0.99310 1.17591 0.86303 0.92721 0.94209 0.91849 1.21125 1.39853 1.00347 0.94738 0.92420 1.25781 0.93790 0.96141 1.02188 1.70029 1.36446 1.20081 1.27840 0.85603 0.77339 0.79739 0.79324 1.21080 1.20631 1.18261 1.21548 0.90291 0.95757 0.96769 1.58482 1.36938 1.34337 1.07759 1.84357 1.17374 1.38125 1.70332 0.87138 0.87552 0.88257 0.81410 0.92631 0.92536 0.96689 0.84332 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.07 10.51 71.23 0.75 -0.32 15 2 C 0.14 5.57 8.34 88.34 0.74 6.30 15 3 N -0.51 -22.84 11.29 -303.81 -3.43 -26.27 15 4 C -0.10 -4.74 11.78 83.39 0.98 -3.76 15 5 C 0.02 0.74 5.87 24.79 0.15 0.89 15 6 C 0.11 5.53 2.41 -12.28 -0.03 5.51 15 7 H 0.06 3.54 7.47 -2.39 -0.02 3.52 15 8 C -0.52 -27.72 7.45 25.60 0.19 -27.53 15 9 H 0.06 2.99 7.82 -2.91 -0.02 2.97 15 10 C 0.02 1.23 5.45 84.65 0.46 1.69 15 11 N -0.91 -52.07 12.91 21.44 0.28 -51.79 15 12 Si 0.95 42.90 29.54 68.60 2.03 44.92 15 13 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 14 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 15 H -0.26 -10.96 7.11 99.48 0.71 -10.26 15 16 C 0.09 3.61 6.19 86.31 0.53 4.15 15 17 N -0.84 -31.23 9.57 -186.72 -1.79 -33.01 15 18 O -0.21 -9.82 10.78 -3.81 -0.04 -9.87 15 19 H 0.11 2.08 8.14 -2.39 -0.02 2.06 15 20 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 21 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 22 H 0.17 7.98 8.06 -2.91 -0.02 7.95 15 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 15 24 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 15 26 H 0.34 10.02 9.08 -89.70 -0.81 9.20 15 27 H 0.35 13.23 8.25 -89.69 -0.74 12.49 15 Total: -1.00 -64.66 243.11 0.45 -64.21 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.36 Total: 24.88 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 3.77 Total: -13.07 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -4.94 Total: -111.07 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.04 Total: -9.87 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -64.66 0.45 -64.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983085.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.775 kcal (2) G-P(sol) polarization free energy of solvation -64.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds