Wall clock time and date at job start Mon Mar 30 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30260 * 125.61801 * 2 1 4 4 C 1.34485 * 108.69814 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66950 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.44063 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.46984 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.46676 * 120.00199 * 6 5 4 9 9 H 1.08000 * 119.99820 * 0.02562 * 8 6 5 10 10 C 1.37876 * 119.99869 * 180.02562 * 8 6 5 11 11 N 1.31508 * 120.00062 * 0.02562 * 10 8 6 12 12 Si 1.86803 * 119.99839 * 180.02562 * 10 8 6 13 13 H 1.48490 * 109.47432 * 89.99938 * 12 10 8 14 14 H 1.48500 * 109.46780 * 210.00020 * 12 10 8 15 15 H 1.48503 * 109.46996 * 329.99522 * 12 10 8 16 16 C 1.52991 * 109.47267 * 240.00375 * 6 5 4 17 17 N 1.46897 * 109.47138 * 65.00605 * 16 6 5 18 18 O 1.33967 * 125.62312 * 179.97438 * 2 1 3 19 19 H 1.09004 * 109.46566 * 90.02465 * 1 2 3 20 20 H 1.09003 * 109.46769 * 210.02116 * 1 2 3 21 21 H 1.09001 * 109.47149 * 330.02647 * 1 2 3 22 22 H 1.08003 * 126.15957 * 179.97438 * 4 3 2 23 23 H 0.96999 * 120.00109 * 180.02562 * 11 10 8 24 24 H 1.09005 * 109.46822 * 185.00154 * 16 6 5 25 25 H 1.09003 * 109.47550 * 304.99978 * 16 6 5 26 26 H 1.00910 * 110.99966 * 180.02562 * 17 16 6 27 27 H 1.00898 * 110.99832 * 303.94738 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0015 6 6 4.7938 -1.5549 0.0018 7 1 5.6884 -0.9322 0.0017 8 6 4.7874 -2.4241 1.2329 9 1 3.9779 -2.3477 1.9437 10 6 5.8152 -3.3167 1.4518 11 7 6.8012 -3.4093 0.5866 12 14 5.8069 -4.3946 2.9775 13 1 5.0981 -5.6655 2.6819 14 1 7.2048 -4.6901 3.3823 15 1 5.1115 -3.6850 4.0812 16 6 4.7870 -2.4390 -1.2467 17 7 4.9139 -1.5969 -2.4437 18 8 2.2873 -1.0890 0.0005 19 1 -0.3632 -0.0004 -1.0277 20 1 -0.3633 -0.8898 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 4.4157 1.3163 0.0003 23 1 7.5240 -4.0376 0.7404 24 1 5.6237 -3.1363 -1.2027 25 1 3.8515 -2.9965 -1.2922 26 1 4.9116 -2.1579 -3.2824 27 1 4.1857 -0.8992 -2.4738 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259983098.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:55 Heat of formation + Delta-G solvation = -13.401516 kcal Electronic energy + Delta-G solvation = -12393.331983 eV Core-core repulsion = 10151.453927 eV Total energy + Delta-G solvation = -2241.878056 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.14993 -37.32729 -35.56702 -34.29082 -33.00744 -30.87741 -27.73186 -25.88199 -23.47412 -22.80964 -21.34299 -18.74522 -17.65241 -17.49994 -16.87201 -16.27790 -15.72938 -15.24500 -14.73234 -14.14252 -14.04081 -13.75021 -13.34348 -13.16663 -12.77678 -12.58929 -12.43558 -12.15099 -12.08377 -11.47138 -11.29985 -10.65272 -9.55291 -9.37328 -8.20945 -6.39019 0.68982 1.40176 1.41331 1.51821 1.80267 1.95942 2.38174 3.04679 3.30712 3.92987 4.12798 4.26792 4.51384 4.66021 4.67579 4.78794 4.81384 5.02156 5.13699 5.40949 5.55995 5.63688 5.72710 6.07351 6.36429 6.59808 6.73333 6.87740 7.30128 8.82463 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.011880 C = 0.010106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.069172 B = 2356.423780 C = 2770.040315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.152 3.848 3 N -0.503 5.503 4 C -0.081 4.081 5 C -0.002 4.002 6 C 0.128 3.872 7 H 0.045 0.955 8 C -0.544 4.544 9 H 0.046 0.954 10 C 0.025 3.975 11 N -0.904 5.904 12 Si 0.961 3.039 13 H -0.272 1.272 14 H -0.276 1.276 15 H -0.273 1.273 16 C 0.079 3.921 17 N -0.846 5.846 18 O -0.215 6.215 19 H 0.109 0.891 20 H 0.098 0.902 21 H 0.112 0.888 22 H 0.186 0.814 23 H 0.269 0.731 24 H 0.089 0.911 25 H -0.006 1.006 26 H 0.341 0.659 27 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.091 2.520 -2.164 9.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.054 4.054 3 N -0.233 5.233 4 C -0.217 4.217 5 C -0.056 4.056 6 C 0.109 3.891 7 H 0.063 0.937 8 C -0.582 4.582 9 H 0.064 0.936 10 C -0.176 4.176 11 N -0.542 5.542 12 Si 0.786 3.214 13 H -0.197 1.197 14 H -0.201 1.201 15 H -0.198 1.198 16 C -0.052 4.052 17 N -0.375 5.375 18 O -0.103 6.103 19 H 0.128 0.872 20 H 0.117 0.883 21 H 0.130 0.870 22 H 0.203 0.797 23 H 0.078 0.922 24 H 0.107 0.893 25 H 0.012 0.988 26 H 0.154 0.846 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.453 3.205 -1.895 9.237 hybrid contribution -0.222 -1.543 0.497 1.636 sum -8.675 1.662 -1.398 8.942 Atomic orbital electron populations 1.20444 0.78008 1.06066 1.05958 1.27373 0.98277 0.78426 1.01358 1.70312 1.02144 1.31132 1.19736 1.23114 0.95262 0.93177 1.10188 1.24315 0.83651 0.95764 1.01830 1.17426 0.85486 0.91824 0.94407 0.93697 1.21168 1.08186 1.22296 1.06560 0.93565 1.25683 0.94478 0.97813 0.99599 1.69962 1.10866 1.36831 1.36502 0.85504 0.77688 0.78894 0.79308 1.19700 1.20058 1.19823 1.21764 0.98861 0.95581 0.88966 1.58833 1.54581 1.19184 1.04917 1.84397 1.17344 1.38460 1.70122 0.87230 0.88291 0.86966 0.79682 0.92172 0.89262 0.98792 0.84632 0.86106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.02 10.51 71.24 0.75 -0.27 15 2 C 0.15 5.45 8.34 88.34 0.74 6.19 15 3 N -0.50 -19.81 11.30 -303.82 -3.43 -23.24 15 4 C -0.08 -3.41 11.79 83.39 0.98 -2.42 15 5 C 0.00 -0.11 4.86 24.79 0.12 0.01 15 6 C 0.13 6.54 2.40 -12.29 -0.03 6.51 15 7 H 0.05 2.50 8.11 -2.39 -0.02 2.48 15 8 C -0.54 -30.20 8.55 25.60 0.22 -29.98 15 9 H 0.05 2.62 7.74 -2.91 -0.02 2.60 15 10 C 0.03 1.36 5.29 84.66 0.45 1.81 15 11 N -0.90 -50.21 11.30 21.45 0.24 -49.96 15 12 Si 0.96 42.72 29.54 68.60 2.03 44.75 15 13 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 14 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 16 C 0.08 3.80 6.07 86.30 0.52 4.32 15 17 N -0.85 -33.98 9.62 -186.73 -1.80 -35.77 15 18 O -0.22 -9.35 10.77 -3.68 -0.04 -9.39 15 19 H 0.11 1.83 8.14 -2.38 -0.02 1.81 15 20 H 0.10 1.82 8.14 -2.39 -0.02 1.80 15 21 H 0.11 2.00 8.14 -2.39 -0.02 1.98 15 22 H 0.19 7.15 8.06 -2.91 -0.02 7.12 15 23 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 24 H 0.09 4.76 5.96 -2.38 -0.01 4.75 15 25 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 15 26 H 0.34 11.69 9.08 -89.69 -0.81 10.87 15 27 H 0.33 12.58 8.07 -89.70 -0.72 11.86 15 Total: -1.00 -63.08 239.54 0.41 -62.68 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: -0.35 Total: 24.78 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 3.75 Total: -13.84 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -4.99 Total: -108.98 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.04 Total: -9.39 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -63.08 0.41 -62.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259983098.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.274 kcal (2) G-P(sol) polarization free energy of solvation -63.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds