Wall clock time and date at job start Mon Mar 30 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46936 * 2 1 4 4 C 1.50696 * 109.47153 * 120.00250 * 2 1 3 5 5 H 1.08007 * 120.00041 * 114.37985 * 4 2 1 6 6 C 1.37869 * 120.00544 * 294.37813 * 4 2 1 7 7 N 1.31513 * 120.00670 * 157.35818 * 6 4 2 8 8 Si 1.86809 * 119.99633 * 337.35922 * 6 4 2 9 9 H 1.48501 * 109.47118 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47052 * 60.00040 * 8 6 4 11 11 H 1.48499 * 109.47307 * 299.99702 * 8 6 4 12 12 C 1.50703 * 109.47108 * 240.00401 * 2 1 3 13 13 C 1.34824 * 125.77194 * 119.68565 * 12 2 1 14 14 C 1.41475 * 108.08011 * 179.88433 * 13 12 2 15 15 O 1.21787 * 126.19445 * 180.15337 * 14 13 12 16 16 N 1.34875 * 107.61540 * 0.38452 * 14 13 12 17 17 H 0.97001 * 126.16427 * 179.74461 * 16 14 13 18 18 N 1.36597 * 125.77233 * 300.00448 * 12 2 1 19 19 C 1.46498 * 125.91247 * 359.93533 * 18 12 2 20 20 H 1.09008 * 109.46538 * 293.39439 * 1 2 3 21 21 H 1.08996 * 109.46928 * 53.39252 * 1 2 3 22 22 H 1.08995 * 109.47140 * 173.40139 * 1 2 3 23 23 H 0.96995 * 119.99713 * 354.92756 * 7 6 4 24 24 H 1.07999 * 125.96100 * 359.97438 * 13 12 2 25 25 H 1.08996 * 109.47236 * 89.99935 * 19 18 12 26 26 H 1.09000 * 109.47128 * 210.00583 * 19 18 12 27 27 H 1.09000 * 109.46825 * 330.00222 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5764 -1.6385 1.1339 6 6 1.7976 -0.1759 2.4794 7 7 1.8170 -0.9517 3.5411 8 14 1.4517 1.6507 2.6635 9 1 1.2338 1.9711 4.0971 10 1 0.2364 2.0051 1.8873 11 1 2.6095 2.4277 2.1526 12 6 2.0324 -0.7103 -1.2305 13 6 2.8058 -0.1685 -2.1928 14 6 3.0566 -1.1635 -3.1667 15 8 3.7225 -1.0289 -4.1775 16 7 2.4205 -2.2868 -2.7758 17 1 2.4106 -3.1333 -3.2493 18 7 1.7760 -2.0103 -1.5627 19 6 0.9679 -2.9526 -0.7848 20 1 -0.3633 0.4081 0.9433 21 1 -0.3633 0.6128 -0.8249 22 1 -0.3633 -1.0208 -0.1181 23 1 1.9232 -1.9104 3.4393 24 1 3.1715 0.8474 -2.2154 25 1 -0.0721 -2.8897 -1.1047 26 1 1.3367 -3.9658 -0.9448 27 1 1.0381 -2.7035 0.2740 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259986237.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:03 Heat of formation + Delta-G solvation = 32.173870 kcal Electronic energy + Delta-G solvation = -12542.649144 eV Core-core repulsion = 10302.747385 eV Total energy + Delta-G solvation = -2239.901759 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.92490 -36.82018 -34.61158 -31.99266 -31.57037 -29.65865 -25.40668 -25.01588 -22.53867 -20.64559 -18.92326 -17.69471 -17.52325 -15.36455 -14.88416 -14.39917 -14.17494 -13.53128 -13.44757 -12.92105 -12.64621 -12.22961 -11.98917 -11.66335 -11.18264 -10.85456 -10.63870 -10.15453 -9.96040 -9.30594 -9.22738 -8.81084 -8.39321 -7.19940 -6.68927 -4.33354 2.20179 2.38836 3.29098 3.37441 3.51958 3.95218 4.34257 4.42226 4.99230 5.21294 5.40735 5.53658 5.94321 6.05501 6.24747 6.27935 6.38066 6.51795 6.69130 6.90173 6.99119 7.14498 7.69894 7.77613 7.98985 8.13337 8.61804 8.89477 9.32489 10.67562 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.048653 B = 0.011820 C = 0.010768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.360502 B = 2368.231872 C = 2599.783584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 H 0.056 0.944 4 C -0.614 4.614 5 H 0.063 0.937 6 C 0.047 3.953 7 N -0.888 5.888 8 Si 1.033 2.967 9 H -0.284 1.284 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.257 3.743 13 C -0.393 4.393 14 C 0.534 3.466 15 O -0.582 6.582 16 N -0.533 5.533 17 H 0.423 0.577 18 N -0.390 5.390 19 C 0.098 3.902 20 H 0.062 0.938 21 H 0.031 0.969 22 H 0.046 0.954 23 H 0.271 0.729 24 H 0.152 0.848 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 -1.864 -4.817 6.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.040 3.960 3 H 0.074 0.926 4 C -0.651 4.651 5 H 0.081 0.919 6 C -0.161 4.161 7 N -0.519 5.519 8 Si 0.860 3.140 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.140 3.860 13 C -0.423 4.423 14 C 0.333 3.667 15 O -0.465 6.465 16 N -0.281 5.281 17 H 0.268 0.732 18 N -0.186 5.186 19 C -0.042 4.042 20 H 0.081 0.919 21 H 0.050 0.950 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.170 0.830 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.705 -0.864 -4.172 6.347 hybrid contribution 0.330 -1.852 -1.318 2.297 sum -4.375 -2.716 -5.490 7.527 Atomic orbital electron populations 1.22248 0.97245 1.00504 1.00651 1.18193 0.92899 0.96035 0.88845 0.92573 1.21710 1.42058 1.11182 0.90131 0.91914 1.25719 0.92829 1.05828 0.91736 1.70879 1.42668 1.06549 1.31804 0.84183 0.77603 0.75713 0.76489 1.20921 1.19947 1.20465 1.21560 0.89507 0.80976 0.93988 1.21538 1.17696 1.02558 1.00514 1.17061 0.80102 0.82555 0.86956 1.90798 1.44411 1.81943 1.29327 1.46081 1.50804 1.15703 1.15542 0.73223 1.46149 1.48032 1.11197 1.13198 1.22214 0.92855 0.91002 0.98175 0.91899 0.94996 0.93491 0.91937 0.83002 0.92100 0.91431 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.86 37.16 0.33 -2.47 15 2 C 0.06 1.29 2.08 -92.92 -0.19 1.10 15 3 H 0.06 1.20 6.68 -51.93 -0.35 0.85 15 4 C -0.61 -14.94 7.21 -34.45 -0.25 -15.19 15 5 H 0.06 1.65 7.34 -52.48 -0.39 1.27 15 6 C 0.05 1.19 5.21 -17.82 -0.09 1.10 15 7 N -0.89 -24.36 13.70 55.43 0.76 -23.60 15 8 Si 1.03 22.50 26.43 -169.99 -4.49 18.01 15 9 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 10 H -0.27 -5.42 6.11 56.52 0.35 -5.08 15 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 12 C 0.26 5.25 5.51 -81.68 -0.45 4.80 15 13 C -0.39 -8.29 10.71 -39.56 -0.42 -8.71 15 14 C 0.53 11.42 8.35 -14.98 -0.13 11.29 15 15 O -0.58 -14.04 18.06 5.11 0.09 -13.95 15 16 N -0.53 -9.41 7.24 29.09 0.21 -9.20 15 17 H 0.42 5.94 8.96 -182.58 -1.64 4.31 15 18 N -0.39 -7.01 4.06 -63.61 -0.26 -7.27 15 19 C 0.10 1.43 9.72 59.85 0.58 2.01 15 20 H 0.06 1.23 5.42 -51.92 -0.28 0.95 15 21 H 0.03 0.54 8.14 -51.93 -0.42 0.11 15 22 H 0.05 0.81 5.82 -51.93 -0.30 0.51 15 23 H 0.27 7.33 8.73 -40.82 -0.36 6.97 15 24 H 0.15 3.03 8.06 -52.49 -0.42 2.60 15 25 H 0.06 0.76 7.72 -51.93 -0.40 0.36 15 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 27 H 0.12 2.08 5.57 -51.93 -0.29 1.79 15 LS Contribution 228.04 15.07 3.44 3.44 Total: -1.00 -30.07 228.04 -4.99 -35.06 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.12 Total: 3.58 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.62 Total: -6.07 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.71 Total: -40.07 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: 0.09 Total: -13.95 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.49 Total: 18.01 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.07 -4.99 -35.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986237.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.239 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds