Wall clock time and date at job start Mon Mar 30 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46936 * 2 1 4 4 C 1.50696 * 109.47153 * 120.00250 * 2 1 3 5 5 H 1.08007 * 120.00041 * 114.37985 * 4 2 1 6 6 C 1.37869 * 120.00544 * 294.37813 * 4 2 1 7 7 N 1.31513 * 120.00670 * 157.35818 * 6 4 2 8 8 Si 1.86809 * 119.99633 * 337.35922 * 6 4 2 9 9 H 1.48501 * 109.47118 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47052 * 60.00040 * 8 6 4 11 11 H 1.48499 * 109.47307 * 299.99702 * 8 6 4 12 12 C 1.50703 * 109.47108 * 240.00401 * 2 1 3 13 13 C 1.34824 * 125.77194 * 119.68565 * 12 2 1 14 14 C 1.41475 * 108.08011 * 179.88433 * 13 12 2 15 15 O 1.21787 * 126.19445 * 180.15337 * 14 13 12 16 16 N 1.34875 * 107.61540 * 0.38452 * 14 13 12 17 17 H 0.97001 * 126.16427 * 179.74461 * 16 14 13 18 18 N 1.36597 * 125.77233 * 300.00448 * 12 2 1 19 19 C 1.46498 * 125.91247 * 359.93533 * 18 12 2 20 20 H 1.09008 * 109.46538 * 293.39439 * 1 2 3 21 21 H 1.08996 * 109.46928 * 53.39252 * 1 2 3 22 22 H 1.08995 * 109.47140 * 173.40139 * 1 2 3 23 23 H 0.96995 * 119.99713 * 354.92756 * 7 6 4 24 24 H 1.07999 * 125.96100 * 359.97438 * 13 12 2 25 25 H 1.08996 * 109.47236 * 89.99935 * 19 18 12 26 26 H 1.09000 * 109.47128 * 210.00583 * 19 18 12 27 27 H 1.09000 * 109.46825 * 330.00222 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5764 -1.6385 1.1339 6 6 1.7976 -0.1759 2.4794 7 7 1.8170 -0.9517 3.5411 8 14 1.4517 1.6507 2.6635 9 1 1.2338 1.9711 4.0971 10 1 0.2364 2.0051 1.8873 11 1 2.6095 2.4277 2.1526 12 6 2.0324 -0.7103 -1.2305 13 6 2.8058 -0.1685 -2.1928 14 6 3.0566 -1.1635 -3.1667 15 8 3.7225 -1.0289 -4.1775 16 7 2.4205 -2.2868 -2.7758 17 1 2.4106 -3.1333 -3.2493 18 7 1.7760 -2.0103 -1.5627 19 6 0.9679 -2.9526 -0.7848 20 1 -0.3633 0.4081 0.9433 21 1 -0.3633 0.6128 -0.8249 22 1 -0.3633 -1.0208 -0.1181 23 1 1.9232 -1.9104 3.4393 24 1 3.1715 0.8474 -2.2154 25 1 -0.0721 -2.8897 -1.1047 26 1 1.3367 -3.9658 -0.9448 27 1 1.0381 -2.7035 0.2740 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986237.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:03 Heat of formation + Delta-G solvation = 10.217520 kcal Electronic energy + Delta-G solvation = -12543.601243 eV Core-core repulsion = 10302.747385 eV Total energy + Delta-G solvation = -2240.853858 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.49474 -38.48902 -36.34758 -33.82351 -33.00892 -31.25680 -26.87370 -26.71234 -24.22771 -22.23788 -20.59891 -19.55012 -19.02046 -16.88830 -16.46037 -16.08108 -15.84512 -15.23551 -14.87669 -14.54937 -14.18762 -13.90647 -13.40885 -13.26369 -12.83284 -12.38352 -12.29454 -11.75640 -11.63448 -11.11750 -10.92876 -10.44543 -10.27414 -8.78050 -8.67730 -6.32311 0.72359 0.81906 1.58071 1.64092 1.81175 2.29065 2.55640 2.98508 3.08444 3.74570 4.08900 4.41877 4.46065 4.62108 4.70937 4.83852 4.89445 4.99226 5.14538 5.31413 5.44176 5.59237 5.89254 6.09984 6.22612 6.48723 6.59583 7.31775 7.39629 8.67610 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.048653 B = 0.011820 C = 0.010768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.360502 B = 2368.231872 C = 2599.783584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.060 3.940 3 H 0.059 0.941 4 C -0.602 4.602 5 H 0.034 0.966 6 C 0.004 3.996 7 N -0.924 5.924 8 Si 1.064 2.936 9 H -0.295 1.295 10 H -0.238 1.238 11 H -0.271 1.271 12 C 0.250 3.750 13 C -0.410 4.410 14 C 0.521 3.479 15 O -0.618 6.618 16 N -0.513 5.513 17 H 0.442 0.558 18 N -0.382 5.382 19 C 0.093 3.907 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.259 0.741 24 H 0.156 0.844 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.970 -1.680 -5.617 8.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.039 3.961 3 H 0.077 0.923 4 C -0.639 4.639 5 H 0.052 0.948 6 C -0.198 4.198 7 N -0.558 5.558 8 Si 0.886 3.114 9 H -0.221 1.221 10 H -0.161 1.161 11 H -0.196 1.196 12 C 0.130 3.870 13 C -0.440 4.440 14 C 0.321 3.679 15 O -0.504 6.504 16 N -0.261 5.261 17 H 0.290 0.710 18 N -0.176 5.176 19 C -0.047 4.047 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.173 0.827 25 H 0.109 0.891 26 H 0.117 0.883 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.024 -0.743 -4.989 7.857 hybrid contribution 0.741 -2.019 -1.067 2.401 sum -5.283 -2.763 -6.056 8.498 Atomic orbital electron populations 1.22159 0.94959 1.01869 1.01296 1.18162 0.94649 0.95763 0.87511 0.92284 1.21753 1.40657 1.09980 0.91512 0.94805 1.26809 0.92591 1.08657 0.91710 1.70983 1.45835 1.06094 1.32903 0.83811 0.79330 0.71881 0.76403 1.22101 1.16136 1.19598 1.21438 0.89731 0.82101 0.93727 1.21694 1.18215 1.03138 1.00941 1.17095 0.80487 0.83562 0.86752 1.90771 1.46185 1.82794 1.30681 1.45870 1.49395 1.15762 1.15123 0.70976 1.46443 1.47185 1.10994 1.13015 1.22437 0.94176 0.91777 0.96260 0.92516 0.92612 0.92338 0.93161 0.82664 0.89094 0.88278 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 8.86 71.98 0.64 -4.35 15 2 C 0.06 2.41 2.08 -12.29 -0.03 2.38 15 3 H 0.06 2.37 6.68 -2.39 -0.02 2.35 15 4 C -0.60 -28.93 7.21 25.60 0.18 -28.75 15 5 H 0.03 1.80 7.34 -2.91 -0.02 1.77 15 6 C 0.00 0.20 5.21 84.65 0.44 0.64 15 7 N -0.92 -51.35 13.70 21.44 0.29 -51.06 15 8 Si 1.06 43.94 26.43 68.60 1.81 45.75 15 9 H -0.29 -12.68 7.11 99.48 0.71 -11.98 15 10 H -0.24 -8.41 6.11 99.48 0.61 -7.80 15 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 12 C 0.25 9.74 5.51 41.03 0.23 9.96 15 13 C -0.41 -16.75 10.71 22.28 0.24 -16.51 15 14 C 0.52 21.66 8.35 85.02 0.71 22.37 15 15 O -0.62 -29.50 18.06 -4.63 -0.08 -29.59 15 16 N -0.51 -16.90 7.24 -180.01 -1.30 -18.21 15 17 H 0.44 11.17 8.96 -213.30 -1.91 9.26 15 18 N -0.38 -12.77 4.06 -355.16 -1.44 -14.22 15 19 C 0.09 2.42 9.72 127.77 1.24 3.66 15 20 H 0.06 2.02 5.42 -2.38 -0.01 2.01 15 21 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.06 1.84 5.82 -2.39 -0.01 1.83 15 23 H 0.26 14.43 8.73 -92.71 -0.81 13.62 15 24 H 0.16 6.06 8.06 -2.91 -0.02 6.03 15 25 H 0.09 1.90 7.72 -2.39 -0.02 1.88 15 26 H 0.10 1.98 8.14 -2.39 -0.02 1.96 15 27 H 0.10 3.17 5.57 -2.39 -0.01 3.15 15 Total: -1.00 -64.31 228.04 2.07 -62.24 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -0.86 Total: 15.68 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 3.65 Total: -10.60 kcal Atomic # 7 Polarization: -81.03 SS G_CDS: -2.45 Total: -83.48 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.08 Total: -29.59 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.81 Total: 45.75 kcal Total: -64.31 2.07 -62.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986237.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.457 kcal (2) G-P(sol) polarization free energy of solvation -64.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds