Wall clock time and date at job start Mon Mar 30 2020 02:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47348 * 2 1 4 4 C 1.50703 * 109.47540 * 240.00044 * 2 1 3 5 5 H 1.07994 * 119.99914 * 240.00488 * 4 2 1 6 6 C 1.37868 * 119.99673 * 59.99740 * 4 2 1 7 7 N 1.31510 * 120.00567 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99874 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47233 * 60.00041 * 8 6 4 10 10 H 1.48501 * 109.47418 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47104 * 300.00044 * 8 6 4 12 12 C 1.50706 * 109.47243 * 120.00017 * 2 1 3 13 13 C 1.34822 * 125.77356 * 246.65340 * 12 2 1 14 14 C 1.41474 * 108.08422 * 179.73328 * 13 12 2 15 15 O 1.21774 * 126.19598 * 180.02562 * 14 13 12 16 16 N 1.34872 * 107.61099 * 0.02562 * 14 13 12 17 17 H 0.97004 * 126.16441 * 180.02562 * 16 14 13 18 18 N 1.36602 * 125.77338 * 66.34119 * 12 2 1 19 19 C 1.46498 * 125.90943 * 0.23153 * 18 12 2 20 20 H 1.08997 * 109.47033 * 53.23099 * 1 2 3 21 21 H 1.08998 * 109.46777 * 173.22845 * 1 2 3 22 22 H 1.09001 * 109.47325 * 293.22690 * 1 2 3 23 23 H 0.97006 * 120.00730 * 180.02562 * 7 6 4 24 24 H 1.08000 * 125.95811 * 359.71930 * 13 12 2 25 25 H 1.08995 * 109.46961 * 95.09324 * 19 18 12 26 26 H 1.09003 * 109.47227 * 215.09658 * 19 18 12 27 27 H 1.08997 * 109.47164 * 335.09545 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.8260 -2.5202 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0324 -0.7104 1.2305 13 6 2.7038 -0.1400 2.2510 14 6 2.9870 -1.1443 3.2063 15 8 3.5812 -0.9896 4.2579 16 7 2.4798 -2.3044 2.7413 17 1 2.5223 -3.1661 3.1846 18 7 1.8792 -2.0401 1.5033 19 6 1.2037 -3.0203 0.6494 20 1 -0.3633 0.6151 -0.8232 21 1 -0.3633 -1.0205 -0.1212 22 1 -0.3634 0.4053 0.9444 23 1 0.7089 1.1614 -3.4844 24 1 2.9778 0.9020 2.3261 25 1 1.9400 -3.5277 0.0261 26 1 0.6892 -3.7517 1.2726 27 1 0.4794 -2.5106 0.0141 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259986245.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:05 Heat of formation + Delta-G solvation = 32.729525 kcal Electronic energy + Delta-G solvation = -12513.807025 eV Core-core repulsion = 10273.929361 eV Total energy + Delta-G solvation = -2239.877664 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.80910 -36.70718 -34.49879 -31.72171 -31.46195 -29.18551 -25.40287 -25.26914 -22.57762 -20.51414 -19.05049 -17.45041 -16.53799 -15.21618 -14.88856 -14.71344 -14.06473 -13.38671 -13.16580 -12.93791 -12.48506 -11.96218 -11.70581 -11.34740 -11.03496 -10.86641 -10.61531 -10.29354 -10.13536 -9.32728 -9.07221 -8.67604 -8.56587 -7.09133 -6.23677 -4.33082 2.31024 2.50035 3.17595 3.24689 3.26843 4.04419 4.25440 4.51777 5.08602 5.31009 5.63145 5.66434 5.94896 6.28804 6.39461 6.62912 6.74273 6.82530 6.92861 7.14621 7.40969 7.55647 7.79336 7.92934 7.98591 8.13978 8.67685 8.98621 9.33525 10.82194 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.050426 B = 0.010923 C = 0.010434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.138765 B = 2562.728759 C = 2682.912122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.065 0.935 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.070 3.930 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.252 3.748 13 C -0.396 4.396 14 C 0.533 3.467 15 O -0.585 6.585 16 N -0.535 5.535 17 H 0.422 0.578 18 N -0.391 5.391 19 C 0.107 3.893 20 H 0.090 0.910 21 H 0.033 0.967 22 H 0.017 0.983 23 H 0.266 0.734 24 H 0.151 0.849 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 -6.126 1.509 6.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.066 3.934 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.135 3.865 13 C -0.426 4.426 14 C 0.333 3.667 15 O -0.468 6.468 16 N -0.283 5.283 17 H 0.266 0.734 18 N -0.187 5.187 19 C -0.034 4.034 20 H 0.109 0.891 21 H 0.052 0.948 22 H 0.036 0.964 23 H 0.076 0.924 24 H 0.169 0.831 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.313 -6.161 1.868 6.841 hybrid contribution 0.388 -1.015 -0.733 1.311 sum -1.925 -7.176 1.135 7.516 Atomic orbital electron populations 1.21860 0.96652 1.00553 1.00213 1.17948 0.93379 0.95926 0.86184 0.91748 1.20910 1.32607 1.13218 0.89585 0.92250 1.24906 0.94623 0.94817 0.98982 1.69859 1.35684 1.22294 1.24127 0.86591 0.79435 0.79614 0.82025 1.20173 1.21093 1.20110 1.22071 0.88686 0.80424 0.95365 1.21536 1.20552 1.01277 0.99218 1.17078 0.80027 0.82633 0.86980 1.90786 1.47195 1.82770 1.26030 1.46072 1.56917 1.12641 1.12648 0.73361 1.46225 1.53654 1.08377 1.10447 1.22098 0.97446 0.91185 0.92647 0.89100 0.94799 0.96438 0.92440 0.83126 0.91773 0.91938 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.72 37.16 0.32 -2.49 15 2 C 0.09 1.92 2.47 -92.92 -0.23 1.69 15 3 H 0.06 1.57 8.11 -51.93 -0.42 1.15 15 4 C -0.53 -12.55 7.22 -34.44 -0.25 -12.80 15 5 H 0.06 1.41 7.17 -52.49 -0.38 1.03 15 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 15 7 N -0.88 -22.55 11.40 55.43 0.63 -21.92 15 8 Si 0.90 19.23 29.54 -169.99 -5.02 14.21 15 9 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 10 H -0.29 -6.16 7.11 56.52 0.40 -5.76 15 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 12 C 0.25 5.27 5.52 -81.68 -0.45 4.82 15 13 C -0.40 -8.57 10.71 -39.56 -0.42 -8.99 15 14 C 0.53 11.59 8.35 -14.98 -0.13 11.46 15 15 O -0.58 -14.31 18.06 5.12 0.09 -14.22 15 16 N -0.54 -9.55 7.24 29.08 0.21 -9.34 15 17 H 0.42 5.99 8.96 -182.58 -1.64 4.35 15 18 N -0.39 -7.11 4.06 -63.61 -0.26 -7.37 15 19 C 0.11 1.56 10.12 59.85 0.61 2.16 15 20 H 0.09 2.09 6.28 -51.93 -0.33 1.76 15 21 H 0.03 0.65 5.75 -51.93 -0.30 0.35 15 22 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 15 23 H 0.27 6.54 8.31 -40.82 -0.34 6.20 15 24 H 0.15 3.13 8.06 -52.49 -0.42 2.71 15 25 H 0.06 0.90 8.08 -51.93 -0.42 0.48 15 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 27 H 0.12 1.80 4.82 -51.93 -0.25 1.55 15 LS Contribution 231.85 15.07 3.49 3.49 Total: -1.00 -29.04 231.85 -5.62 -34.66 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.13 Total: 3.01 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.64 Total: -2.53 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.58 Total: -38.63 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.04 -5.62 -34.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986245.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.391 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds