Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34035 * 126.77488 * 2 1 4 4 N 1.20923 * 111.56752 * 180.02562 * 3 2 1 5 5 C 1.30175 * 111.60575 * 359.97438 * 4 3 2 6 6 C 1.35459 * 126.77782 * 180.02562 * 2 1 3 7 7 C 1.50696 * 128.00383 * 0.02562 * 6 2 1 8 8 H 1.08998 * 109.47318 * 359.97438 * 7 6 2 9 9 C 1.50706 * 109.46796 * 239.99402 * 7 6 2 10 10 H 1.08003 * 119.99616 * 301.44455 * 9 7 6 11 11 C 1.37877 * 120.00123 * 121.44224 * 9 7 6 12 12 N 1.31517 * 120.00045 * 173.23720 * 11 9 7 13 13 Si 1.86801 * 120.00091 * 353.23780 * 11 9 7 14 14 H 1.48506 * 109.46883 * 85.06782 * 13 11 9 15 15 H 1.48492 * 109.47251 * 205.06814 * 13 11 9 16 16 H 1.48499 * 109.46718 * 325.07029 * 13 11 9 17 17 C 1.53003 * 109.47182 * 119.99686 * 7 6 2 18 18 N 1.46897 * 109.46844 * 184.92053 * 17 7 6 19 19 H 1.08992 * 109.47063 * 269.97615 * 1 2 3 20 20 H 1.08991 * 109.47028 * 29.98129 * 1 2 3 21 21 H 1.09003 * 109.46663 * 149.97985 * 1 2 3 22 22 H 1.08001 * 126.80624 * 179.97438 * 5 4 3 23 23 H 0.96994 * 119.99990 * 179.97438 * 12 11 9 24 24 H 1.09002 * 109.46858 * 304.91601 * 17 7 6 25 25 H 1.09000 * 109.47122 * 64.91917 * 17 7 6 26 26 H 1.00897 * 110.99805 * 173.90553 * 18 17 7 27 27 H 1.00906 * 111.00125 * 297.84765 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7564 -0.0005 5 6 3.6214 -0.5372 -0.0004 6 6 2.3181 -1.0850 -0.0005 7 6 1.9225 -2.5391 -0.0017 8 1 0.8355 -2.6200 -0.0017 9 6 2.4759 -3.2112 1.2285 10 1 3.5403 -3.2106 1.4115 11 6 1.6233 -3.8267 2.1203 12 7 2.1118 -4.5261 3.1213 13 14 -0.2256 -3.6672 1.9069 14 1 -0.7051 -4.7020 0.9558 15 1 -0.8934 -3.8543 3.2200 16 1 -0.5479 -2.3187 1.3752 17 6 2.4849 -3.2196 -1.2512 18 7 2.0021 -4.6056 -1.3132 19 1 -0.3633 -0.0004 1.0276 20 1 -0.3633 0.8901 -0.5135 21 1 -0.3633 -0.8899 -0.5142 22 1 4.5529 -1.0839 -0.0011 23 1 1.5121 -4.9587 3.7489 24 1 2.1546 -2.6798 -2.1387 25 1 3.5741 -3.2159 -1.2079 26 1 2.2776 -5.0461 -2.1781 27 1 2.3247 -5.1368 -0.5183 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997508.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = 27.342071 kcal Electronic energy + Delta-G solvation = -12590.613068 eV Core-core repulsion = 10350.501787 eV Total energy + Delta-G solvation = -2240.111281 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.71624 -37.73493 -34.50068 -34.17771 -33.92437 -30.63808 -28.27690 -26.19700 -24.28598 -22.24120 -20.99284 -19.11453 -18.42158 -17.84550 -16.51544 -16.31875 -15.78199 -15.16561 -14.66290 -14.43531 -14.05648 -13.81017 -13.47529 -13.10276 -12.95421 -12.47926 -12.30299 -11.94288 -11.67870 -11.18915 -10.93964 -10.70129 -9.77913 -9.37821 -8.25013 -6.30384 0.66799 1.42813 1.48953 1.52787 1.54392 2.36048 2.43467 3.13176 3.50290 3.89271 4.00368 4.21938 4.43210 4.65440 4.69360 4.72988 4.79364 4.96188 5.08356 5.14816 5.31246 5.42495 5.66530 6.29726 6.44123 6.72211 6.89735 7.37035 7.41592 8.90200 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.032401 B = 0.015283 C = 0.013767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.957674 B = 1831.647833 C = 2033.341812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.060 4.060 3 O 0.086 5.914 4 N -0.397 5.397 5 C -0.009 4.009 6 C -0.174 4.174 7 C 0.085 3.915 8 H 0.060 0.940 9 C -0.501 4.501 10 H 0.029 0.971 11 C 0.025 3.975 12 N -0.946 5.946 13 Si 0.933 3.067 14 H -0.263 1.263 15 H -0.302 1.302 16 H -0.229 1.229 17 C 0.085 3.915 18 N -0.849 5.849 19 H 0.085 0.915 20 H 0.110 0.890 21 H 0.092 0.908 22 H 0.186 0.814 23 H 0.264 0.736 24 H 0.064 0.936 25 H 0.010 0.990 26 H 0.342 0.658 27 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 5.570 -8.509 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 O 0.021 5.979 4 N -0.103 5.103 5 C -0.186 4.186 6 C -0.179 4.179 7 C 0.065 3.935 8 H 0.078 0.922 9 C -0.538 4.538 10 H 0.047 0.953 11 C -0.173 4.173 12 N -0.585 5.585 13 Si 0.757 3.243 14 H -0.188 1.188 15 H -0.230 1.230 16 H -0.152 1.152 17 C -0.046 4.046 18 N -0.380 5.380 19 H 0.103 0.897 20 H 0.128 0.872 21 H 0.111 0.889 22 H 0.203 0.797 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.028 0.972 26 H 0.155 0.845 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.948 6.830 -8.332 11.856 hybrid contribution 0.615 -1.354 0.582 1.597 sum -4.333 5.476 -7.751 10.432 Atomic orbital electron populations 1.20488 0.82076 1.05564 1.04431 1.24705 0.97280 0.85070 1.05236 1.84637 1.11266 1.33569 1.68454 1.73725 0.98045 1.17148 1.21351 1.24942 1.00769 0.89935 1.02970 1.21840 0.92076 0.98902 1.05050 1.17630 0.97325 0.84655 0.93915 0.92206 1.20905 0.93441 1.33372 1.06114 0.95271 1.25869 1.03601 0.93658 0.94191 1.70054 1.37235 1.34223 1.17012 0.85955 0.80044 0.81418 0.76843 1.18751 1.22983 1.15218 1.21651 0.95759 0.90031 0.97202 1.58619 1.67979 1.03725 1.07638 0.89659 0.87181 0.88938 0.79676 0.92700 0.91728 0.97158 0.84540 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.80 9.55 71.24 0.68 -1.12 15 2 C -0.06 -2.11 7.49 25.04 0.19 -1.92 15 3 O 0.09 3.14 11.20 71.68 0.80 3.94 15 4 N -0.40 -15.66 12.07 -59.26 -0.72 -16.38 15 5 C -0.01 -0.35 11.99 85.71 1.03 0.68 15 6 C -0.17 -7.04 4.91 -19.73 -0.10 -7.14 15 7 C 0.08 3.62 2.35 -12.28 -0.03 3.60 15 8 H 0.06 2.53 3.71 -2.39 -0.01 2.52 15 9 C -0.50 -26.43 7.91 25.60 0.20 -26.23 15 10 H 0.03 1.74 8.06 -2.91 -0.02 1.72 15 11 C 0.02 1.36 5.47 84.65 0.46 1.82 15 12 N -0.95 -56.59 13.96 21.45 0.30 -56.29 15 13 Si 0.93 41.49 26.99 68.60 1.85 43.34 15 14 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 15 H -0.30 -13.78 7.11 99.48 0.71 -13.08 15 16 H -0.23 -8.84 5.90 99.48 0.59 -8.25 15 17 C 0.08 3.19 6.13 86.30 0.53 3.72 15 18 N -0.85 -30.61 9.57 -186.72 -1.79 -32.40 15 19 H 0.08 2.22 8.01 -2.39 -0.02 2.20 15 20 H 0.11 2.08 8.14 -2.39 -0.02 2.07 15 21 H 0.09 2.38 7.33 -2.39 -0.02 2.36 15 22 H 0.19 6.97 8.06 -2.91 -0.02 6.95 15 23 H 0.26 14.99 8.31 -92.71 -0.77 14.22 15 24 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 15 26 H 0.34 9.84 9.08 -89.70 -0.81 9.02 15 27 H 0.34 13.93 8.24 -89.69 -0.74 13.19 15 Total: -1.00 -62.65 234.92 2.94 -59.71 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: -0.47 Total: 24.67 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 2.96 Total: -26.60 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -2.20 Total: -105.06 kcal Atomic # 8 Polarization: 3.14 SS G_CDS: 0.80 Total: 3.94 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.85 Total: 43.34 kcal Total: -62.65 2.94 -59.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997508.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.049 kcal (2) G-P(sol) polarization free energy of solvation -62.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds