Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34050 * 126.77807 * 2 1 4 4 N 1.20924 * 111.56400 * 180.02562 * 3 2 1 5 5 C 1.30178 * 111.60448 * 359.74391 * 4 3 2 6 6 C 1.35447 * 126.77639 * 180.02562 * 2 1 3 7 7 C 1.50697 * 128.00855 * 359.96398 * 6 2 1 8 8 H 1.09001 * 109.47066 * 359.97438 * 7 6 2 9 9 C 1.50698 * 109.47576 * 119.99634 * 7 6 2 10 10 H 1.08003 * 120.00057 * 0.02562 * 9 7 6 11 11 C 1.37876 * 120.00356 * 179.97438 * 9 7 6 12 12 N 1.31519 * 119.99989 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00260 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46997 * 90.00238 * 13 11 9 15 15 H 1.48501 * 109.47418 * 210.00367 * 13 11 9 16 16 H 1.48507 * 109.47103 * 330.00231 * 13 11 9 17 17 C 1.53006 * 109.47239 * 240.00059 * 7 6 2 18 18 N 1.46895 * 109.47221 * 64.99805 * 17 7 6 19 19 H 1.09004 * 109.46480 * 269.99952 * 1 2 3 20 20 H 1.09000 * 109.47163 * 29.99144 * 1 2 3 21 21 H 1.08997 * 109.47301 * 149.99710 * 1 2 3 22 22 H 1.08003 * 126.79543 * 180.25587 * 5 4 3 23 23 H 0.96996 * 119.99885 * 179.97438 * 12 11 9 24 24 H 1.08997 * 109.47395 * 185.00076 * 17 7 6 25 25 H 1.09004 * 109.46579 * 304.99353 * 17 7 6 26 26 H 1.00900 * 111.00286 * 180.02562 * 18 17 7 27 27 H 1.00910 * 110.99920 * 303.95616 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3096 1.0737 0.0000 4 7 3.4764 0.7564 -0.0005 5 6 3.6213 -0.5373 0.0045 6 6 2.3179 -1.0849 -0.0005 7 6 1.9224 -2.5390 -0.0004 8 1 0.8354 -2.6199 0.0006 9 6 2.4753 -3.2102 -1.2312 10 1 3.0556 -2.6408 -1.9422 11 6 2.2415 -4.5514 -1.4491 12 7 1.5353 -5.2450 -0.5830 13 14 2.9274 -5.3835 -2.9743 14 1 4.2795 -5.9217 -2.6788 15 1 2.0294 -6.4951 -3.3781 16 1 3.0187 -4.3949 -4.0788 17 6 2.4852 -3.2206 1.2486 18 7 1.8557 -2.6466 2.4453 19 1 -0.3632 0.0000 1.0277 20 1 -0.3633 0.8901 -0.5137 21 1 -0.3634 -0.8899 -0.5139 22 1 4.5528 -1.0839 0.0092 23 1 1.3705 -6.1884 -0.7365 24 1 2.2756 -4.2893 1.2050 25 1 3.5628 -3.0633 1.2938 26 1 2.2113 -3.0802 3.2842 27 1 1.9809 -1.6457 2.4750 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259997510.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = 48.225140 kcal Electronic energy + Delta-G solvation = -12544.037945 eV Core-core repulsion = 10304.832221 eV Total energy + Delta-G solvation = -2239.205724 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.12973 -35.97208 -32.69620 -32.38878 -32.20103 -28.62459 -26.69725 -24.03934 -22.77465 -20.75853 -19.30882 -17.00150 -16.53611 -16.00053 -14.96567 -14.49538 -13.78778 -13.71544 -12.97781 -12.68428 -12.65407 -11.97529 -11.81711 -11.17519 -10.89060 -10.80720 -10.49409 -10.25537 -9.82627 -9.56248 -9.25026 -8.53812 -8.13111 -7.68365 -6.10551 -4.18801 2.22234 3.12825 3.24833 3.32282 3.36599 3.87527 4.35673 5.11536 5.17126 5.38540 5.68558 5.78294 5.94757 6.03318 6.23388 6.40829 6.52358 6.64900 6.84603 7.04776 7.52182 7.72465 7.84101 8.11421 8.30252 8.35085 8.84884 8.97834 9.46675 10.94250 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037844 B = 0.012523 C = 0.011313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.696653 B = 2235.329273 C = 2474.467279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.072 4.072 3 O 0.079 5.921 4 N -0.388 5.388 5 C -0.008 4.008 6 C -0.141 4.141 7 C 0.117 3.883 8 H 0.050 0.950 9 C -0.514 4.514 10 H 0.057 0.943 11 C 0.064 3.936 12 N -0.884 5.884 13 Si 0.894 3.106 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.068 3.932 18 N -0.851 5.851 19 H 0.078 0.922 20 H 0.069 0.931 21 H 0.092 0.908 22 H 0.180 0.820 23 H 0.263 0.737 24 H 0.109 0.891 25 H -0.003 1.003 26 H 0.321 0.679 27 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.715 5.512 2.378 6.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.135 4.135 3 O 0.013 5.987 4 N -0.094 5.094 5 C -0.186 4.186 6 C -0.145 4.145 7 C 0.098 3.902 8 H 0.068 0.932 9 C -0.553 4.553 10 H 0.075 0.925 11 C -0.138 4.138 12 N -0.522 5.522 13 Si 0.722 3.278 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.062 4.062 18 N -0.378 5.378 19 H 0.097 0.903 20 H 0.087 0.913 21 H 0.111 0.889 22 H 0.197 0.803 23 H 0.073 0.927 24 H 0.127 0.873 25 H 0.015 0.985 26 H 0.131 0.869 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.622 6.066 2.082 6.443 hybrid contribution 1.258 -1.045 -0.608 1.745 sum 0.636 5.021 1.474 5.271 Atomic orbital electron populations 1.20170 0.84663 1.03742 1.03236 1.24181 0.95919 0.85828 1.07543 1.84649 1.11471 1.33687 1.68868 1.73748 0.97579 1.17270 1.20797 1.24858 1.00602 0.89774 1.03367 1.21967 0.90857 0.99478 1.02178 1.17309 0.97700 0.81767 0.93419 0.93176 1.21041 1.34176 0.94274 1.05775 0.92482 1.24971 0.94899 0.97304 0.96625 1.69875 1.38673 1.08465 1.35148 0.86554 0.78867 0.79182 0.83227 1.20625 1.21050 1.19887 1.22098 0.92848 1.02988 0.88231 1.58987 1.65779 1.07829 1.05208 0.90301 0.91250 0.88895 0.80321 0.92698 0.87274 0.98514 0.86866 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.17 36.01 0.37 -0.54 15 2 C -0.07 -1.36 7.49 -35.30 -0.26 -1.63 15 3 O 0.08 1.52 11.20 17.15 0.19 1.71 15 4 N -0.39 -7.86 12.07 30.36 0.37 -7.50 15 5 C -0.01 -0.17 11.86 -17.06 -0.20 -0.37 15 6 C -0.14 -3.00 3.90 -104.43 -0.41 -3.41 15 7 C 0.12 2.81 2.37 -92.92 -0.22 2.59 15 8 H 0.05 1.30 7.13 -51.93 -0.37 0.93 15 9 C -0.51 -13.56 8.48 -34.44 -0.29 -13.85 15 10 H 0.06 1.53 7.74 -52.48 -0.41 1.12 15 11 C 0.06 1.70 5.29 -17.82 -0.09 1.61 15 12 N -0.88 -24.08 11.29 55.43 0.63 -23.46 15 13 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 15 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 16 H -0.27 -6.34 7.11 56.52 0.40 -5.93 15 17 C 0.07 1.56 6.05 -3.82 -0.02 1.54 15 18 N -0.85 -16.65 9.62 -10.37 -0.10 -16.75 15 19 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 20 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.09 1.49 7.39 -51.93 -0.38 1.10 15 22 H 0.18 3.42 8.06 -52.48 -0.42 3.00 15 23 H 0.26 6.86 8.31 -40.82 -0.34 6.52 15 24 H 0.11 2.82 5.95 -51.93 -0.31 2.51 15 25 H 0.00 -0.08 7.98 -51.93 -0.41 -0.49 15 26 H 0.32 5.52 9.08 -39.29 -0.36 5.17 15 27 H 0.32 5.96 8.07 -39.29 -0.32 5.64 15 LS Contribution 236.65 15.07 3.57 3.57 Total: -1.00 -27.93 236.65 -4.47 -32.40 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -2.96 Total: 8.49 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.14 Total: -14.07 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.89 Total: -47.71 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.19 Total: 1.71 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.93 -4.47 -32.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997510.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.622 kcal (2) G-P(sol) polarization free energy of solvation -27.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds