Wall clock time and date at job start Mon Mar 30 2020 02:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34050 * 126.77807 * 2 1 4 4 N 1.20924 * 111.56400 * 180.02562 * 3 2 1 5 5 C 1.30178 * 111.60448 * 359.74391 * 4 3 2 6 6 C 1.35447 * 126.77639 * 180.02562 * 2 1 3 7 7 C 1.50697 * 128.00855 * 359.96398 * 6 2 1 8 8 H 1.09001 * 109.47066 * 359.97438 * 7 6 2 9 9 C 1.50698 * 109.47576 * 119.99634 * 7 6 2 10 10 H 1.08003 * 120.00057 * 0.02562 * 9 7 6 11 11 C 1.37876 * 120.00356 * 179.97438 * 9 7 6 12 12 N 1.31519 * 119.99989 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 120.00260 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46997 * 90.00238 * 13 11 9 15 15 H 1.48501 * 109.47418 * 210.00367 * 13 11 9 16 16 H 1.48507 * 109.47103 * 330.00231 * 13 11 9 17 17 C 1.53006 * 109.47239 * 240.00059 * 7 6 2 18 18 N 1.46895 * 109.47221 * 64.99805 * 17 7 6 19 19 H 1.09004 * 109.46480 * 269.99952 * 1 2 3 20 20 H 1.09000 * 109.47163 * 29.99144 * 1 2 3 21 21 H 1.08997 * 109.47301 * 149.99710 * 1 2 3 22 22 H 1.08003 * 126.79543 * 180.25587 * 5 4 3 23 23 H 0.96996 * 119.99885 * 179.97438 * 12 11 9 24 24 H 1.08997 * 109.47395 * 185.00076 * 17 7 6 25 25 H 1.09004 * 109.46579 * 304.99353 * 17 7 6 26 26 H 1.00900 * 111.00286 * 180.02562 * 18 17 7 27 27 H 1.00910 * 110.99920 * 303.95616 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3096 1.0737 0.0000 4 7 3.4764 0.7564 -0.0005 5 6 3.6213 -0.5373 0.0045 6 6 2.3179 -1.0849 -0.0005 7 6 1.9224 -2.5390 -0.0004 8 1 0.8354 -2.6199 0.0006 9 6 2.4753 -3.2102 -1.2312 10 1 3.0556 -2.6408 -1.9422 11 6 2.2415 -4.5514 -1.4491 12 7 1.5353 -5.2450 -0.5830 13 14 2.9274 -5.3835 -2.9743 14 1 4.2795 -5.9217 -2.6788 15 1 2.0294 -6.4951 -3.3781 16 1 3.0187 -4.3949 -4.0788 17 6 2.4852 -3.2206 1.2486 18 7 1.8557 -2.6466 2.4453 19 1 -0.3632 0.0000 1.0277 20 1 -0.3633 0.8901 -0.5137 21 1 -0.3634 -0.8899 -0.5139 22 1 4.5528 -1.0839 0.0092 23 1 1.3705 -6.1884 -0.7365 24 1 2.2756 -4.2893 1.2050 25 1 3.5628 -3.0633 1.2938 26 1 2.2113 -3.0802 3.2842 27 1 1.9809 -1.6457 2.4750 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259997510.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:24 Heat of formation + Delta-G solvation = 29.232956 kcal Electronic energy + Delta-G solvation = -12544.861508 eV Core-core repulsion = 10304.832221 eV Total energy + Delta-G solvation = -2240.029287 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.71263 -37.74193 -34.47157 -33.99449 -33.86379 -30.37767 -28.17883 -25.97690 -24.44679 -22.38652 -21.02533 -18.71992 -18.27321 -17.64867 -16.81741 -16.22938 -15.52920 -15.33846 -14.60678 -14.24379 -13.93348 -13.77817 -13.23279 -12.99096 -12.74309 -12.48337 -12.34401 -11.95770 -11.66059 -11.40469 -10.94826 -10.53898 -9.75021 -9.35381 -8.11546 -6.26268 0.68188 1.41149 1.43141 1.50007 1.55376 2.37490 2.43799 3.14455 3.53284 3.95093 4.05936 4.33525 4.50734 4.71676 4.79446 4.82637 4.99464 5.05441 5.18220 5.40704 5.55069 5.81917 5.92226 6.25350 6.52784 6.73594 6.87753 7.41910 7.42199 8.91896 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037844 B = 0.012523 C = 0.011313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.696653 B = 2235.329273 C = 2474.467279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.053 4.053 3 O 0.086 5.914 4 N -0.395 5.395 5 C -0.013 4.013 6 C -0.173 4.173 7 C 0.126 3.874 8 H 0.026 0.974 9 C -0.530 4.530 10 H 0.046 0.954 11 C 0.023 3.977 12 N -0.906 5.906 13 Si 0.951 3.049 14 H -0.276 1.276 15 H -0.281 1.281 16 H -0.274 1.274 17 C 0.080 3.920 18 N -0.846 5.846 19 H 0.100 0.900 20 H 0.101 0.899 21 H 0.080 0.920 22 H 0.186 0.814 23 H 0.264 0.736 24 H 0.080 0.920 25 H -0.007 1.007 26 H 0.337 0.663 27 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 6.268 2.331 6.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.116 4.116 3 O 0.021 5.979 4 N -0.101 5.101 5 C -0.190 4.190 6 C -0.177 4.177 7 C 0.106 3.894 8 H 0.044 0.956 9 C -0.569 4.569 10 H 0.065 0.935 11 C -0.177 4.177 12 N -0.545 5.545 13 Si 0.777 3.223 14 H -0.201 1.201 15 H -0.206 1.206 16 H -0.199 1.199 17 C -0.051 4.051 18 N -0.375 5.375 19 H 0.118 0.882 20 H 0.120 0.880 21 H 0.099 0.901 22 H 0.203 0.797 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.011 0.989 26 H 0.149 0.851 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.855 6.835 2.049 7.187 hybrid contribution 1.290 -1.230 -0.564 1.870 sum 0.435 5.605 1.485 5.815 Atomic orbital electron populations 1.20360 0.81867 1.04708 1.04910 1.24750 0.97345 0.84916 1.04555 1.84647 1.11270 1.33560 1.68412 1.73738 0.98065 1.16941 1.21330 1.24975 1.00771 0.89965 1.03334 1.21733 0.91896 0.98787 1.05247 1.17019 0.95927 0.83451 0.92962 0.95600 1.21291 1.34209 0.94714 1.06686 0.93528 1.25625 0.95179 0.97855 0.99060 1.69986 1.39449 1.08625 1.36419 0.85659 0.78367 0.78150 0.80095 1.20136 1.20606 1.19918 1.21759 0.92673 1.01268 0.89375 1.58830 1.65379 1.08446 1.04810 0.88158 0.88029 0.90095 0.79682 0.92667 0.90203 0.98858 0.85143 0.86028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.17 71.24 0.72 -0.95 15 2 C -0.05 -1.89 7.49 25.04 0.19 -1.70 15 3 O 0.09 3.13 11.20 71.53 0.80 3.93 15 4 N -0.39 -15.39 12.07 -59.25 -0.72 -16.10 15 5 C -0.01 -0.53 11.86 85.71 1.02 0.49 15 6 C -0.17 -7.22 3.90 -19.74 -0.08 -7.29 15 7 C 0.13 6.03 2.37 -12.29 -0.03 6.01 15 8 H 0.03 1.36 7.13 -2.39 -0.02 1.34 15 9 C -0.53 -28.16 8.48 25.60 0.22 -27.94 15 10 H 0.05 2.51 7.74 -2.91 -0.02 2.49 15 11 C 0.02 1.21 5.29 84.65 0.45 1.66 15 12 N -0.91 -49.76 11.29 21.45 0.24 -49.51 15 13 Si 0.95 42.28 29.54 68.60 2.03 44.31 15 14 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 16 H -0.27 -12.10 7.11 99.48 0.71 -11.40 15 17 C 0.08 3.67 6.05 86.31 0.52 4.19 15 18 N -0.85 -32.23 9.62 -186.72 -1.80 -34.03 15 19 H 0.10 2.37 8.14 -2.38 -0.02 2.35 15 20 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 21 H 0.08 2.47 7.39 -2.39 -0.02 2.45 15 22 H 0.19 7.01 8.06 -2.91 -0.02 6.99 15 23 H 0.26 13.82 8.31 -92.71 -0.77 13.05 15 24 H 0.08 4.18 5.95 -2.39 -0.01 4.16 15 25 H -0.01 -0.31 7.98 -2.39 -0.02 -0.33 15 26 H 0.34 11.13 9.08 -89.69 -0.81 10.31 15 27 H 0.33 11.73 8.07 -89.69 -0.72 11.01 15 Total: -1.00 -58.39 236.65 3.23 -55.17 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.34 Total: 21.79 kcal Atomic # 6 Polarization: -28.56 SS G_CDS: 3.01 Total: -25.55 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -2.27 Total: -99.64 kcal Atomic # 8 Polarization: 3.13 SS G_CDS: 0.80 Total: 3.93 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -58.39 3.23 -55.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259997510.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.398 kcal (2) G-P(sol) polarization free energy of solvation -58.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds