Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 N 1.39852 * 125.68705 * 270.02708 * 3 2 1 5 5 C 1.30273 * 109.46455 * 179.72910 * 4 3 2 6 6 C 1.50700 * 125.90368 * 180.25324 * 5 4 3 7 7 C 1.41838 * 108.18756 * 0.38504 * 5 4 3 8 8 C 1.41288 * 126.61864 * 179.87992 * 7 5 4 9 9 H 1.08004 * 120.00190 * 27.61919 * 8 7 5 10 10 C 1.39598 * 119.99772 * 207.61933 * 8 7 5 11 11 N 1.31147 * 120.00420 * 26.22610 * 10 8 7 12 12 Si 1.86810 * 119.99742 * 206.22992 * 10 8 7 13 13 H 1.48502 * 109.46591 * 269.99601 * 12 10 8 14 14 H 1.48496 * 109.46963 * 29.99919 * 12 10 8 15 15 H 1.48498 * 109.47132 * 150.00061 * 12 10 8 16 16 C 1.34920 * 125.68996 * 89.99640 * 3 2 1 17 17 O 1.35290 * 126.51856 * 0.02751 * 16 3 2 18 18 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.47148 * 299.99705 * 1 2 3 20 20 H 1.08998 * 109.46918 * 60.00198 * 1 2 3 21 21 H 1.08995 * 109.47148 * 240.00294 * 2 1 3 22 22 H 1.08998 * 109.46918 * 119.99802 * 2 1 3 23 23 H 1.08996 * 109.47047 * 270.15576 * 6 5 4 24 24 H 1.09000 * 109.47592 * 30.15504 * 6 5 4 25 25 H 1.09005 * 109.47079 * 150.15925 * 6 5 4 26 26 H 0.97003 * 119.99397 * 5.71979 * 11 10 8 27 27 H 0.96701 * 113.99574 * 268.80375 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2898 2.1506 -1.1359 5 6 2.7014 3.3318 -0.7720 6 6 3.0905 4.4559 -1.6971 7 6 2.7229 3.3758 0.6456 8 6 3.1095 4.4719 1.4489 9 1 3.0007 5.4797 1.0761 10 6 3.6320 4.2523 2.7247 11 7 4.2385 3.1224 2.9994 12 14 3.4672 5.5679 4.0407 13 1 4.6432 6.4729 3.9856 14 1 2.2280 6.3514 3.8048 15 1 3.3995 4.9250 5.3776 16 6 2.2807 2.1234 1.0958 17 8 2.1433 1.7335 2.3840 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 4.1543 4.3877 -1.9244 24 1 2.5162 4.3818 -2.6206 25 1 2.8824 5.4114 -1.2155 26 1 4.3976 2.4739 2.2958 27 1 1.2764 1.9308 2.7643 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260115558.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = 17.880563 kcal Electronic energy + Delta-G solvation = -12622.379512 eV Core-core repulsion = 10381.857948 eV Total energy + Delta-G solvation = -2240.521563 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.62304 -35.72178 -34.24019 -32.76179 -30.14996 -28.08417 -26.56390 -24.39620 -22.10593 -19.90212 -18.81510 -17.48662 -16.15350 -15.29963 -14.12834 -13.89044 -13.76735 -13.26449 -12.81640 -12.59621 -12.27288 -11.66887 -11.49180 -11.35679 -11.04113 -10.85798 -10.80079 -10.51113 -10.21626 -9.42635 -9.03996 -8.47887 -7.75715 -7.08686 -6.74579 -3.89955 3.01652 3.31425 3.36218 3.53459 3.64499 4.13279 4.33837 5.19748 5.37749 5.45299 5.58870 5.69647 5.88934 6.00619 6.19689 6.25113 6.40074 6.49293 6.66385 7.11293 7.40111 7.67444 7.95892 8.30715 8.33583 8.83700 9.11663 9.27267 9.35640 10.58632 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.014187 C = 0.011287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.276213 B = 1973.141794 C = 2480.224992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 N -0.389 5.389 4 N -0.303 5.303 5 C 0.009 3.991 6 C -0.048 4.048 7 C -0.016 4.016 8 C -0.529 4.529 9 H 0.067 0.933 10 C 0.037 3.963 11 N -0.800 5.800 12 Si 1.063 2.937 13 H -0.284 1.284 14 H -0.282 1.282 15 H -0.280 1.280 16 C 0.073 3.927 17 O -0.440 6.440 18 H 0.063 0.937 19 H 0.054 0.946 20 H 0.058 0.942 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.291 0.709 27 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -1.650 -2.340 5.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 N -0.188 5.188 4 N -0.131 5.131 5 C -0.157 4.157 6 C -0.107 4.107 7 C -0.026 4.026 8 C -0.561 4.561 9 H 0.085 0.915 10 C -0.183 4.183 11 N -0.425 5.425 12 Si 0.889 3.111 13 H -0.210 1.210 14 H -0.208 1.208 15 H -0.205 1.205 16 C -0.089 4.089 17 O -0.238 6.238 18 H 0.082 0.918 19 H 0.073 0.927 20 H 0.077 0.923 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.144 -2.419 -1.597 5.057 hybrid contribution -0.734 0.066 -0.727 1.035 sum -4.878 -2.352 -2.323 5.893 Atomic orbital electron populations 1.22165 0.96125 1.01459 1.02484 1.21149 0.93813 0.80713 1.02524 1.47909 1.56532 1.10776 1.03622 1.76338 1.24301 1.04615 1.07845 1.22166 1.04938 0.93714 0.94916 1.19822 1.00091 0.94736 0.96008 1.17824 1.01928 0.92198 0.90651 1.19383 1.42620 0.92814 1.01301 0.91460 1.26509 0.92541 1.00141 0.99115 1.70402 1.26046 1.07484 1.38590 0.83701 0.76856 0.74916 0.75655 1.21041 1.20783 1.20524 1.18731 1.16889 0.93780 0.79538 1.84956 1.35888 1.82811 1.20130 0.91844 0.92683 0.92264 0.90627 0.90299 0.92280 0.93048 0.91279 0.89639 0.80076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.24 37.16 0.38 -2.12 15 2 C 0.14 2.58 7.08 -4.04 -0.03 2.55 15 3 N -0.39 -9.22 3.59 -60.47 -0.22 -9.44 15 4 N -0.30 -7.49 12.45 33.98 0.42 -7.07 15 5 C 0.01 0.22 7.27 -81.88 -0.60 -0.38 15 6 C -0.05 -0.97 10.26 36.01 0.37 -0.60 15 7 C -0.02 -0.43 5.34 -106.61 -0.57 -1.00 15 8 C -0.53 -14.72 8.97 -37.92 -0.34 -15.06 15 9 H 0.07 1.82 7.60 -52.48 -0.40 1.42 15 10 C 0.04 1.01 4.89 -17.34 -0.08 0.92 15 11 N -0.80 -23.10 12.03 55.53 0.67 -22.43 15 12 Si 1.06 23.25 30.00 -169.99 -5.10 18.15 15 13 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 16 C 0.07 1.90 6.98 -15.44 -0.11 1.79 15 17 O -0.44 -10.92 11.13 -17.56 -0.20 -11.12 15 18 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.05 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.08 1.39 8.12 -51.93 -0.42 0.97 15 23 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 25 H 0.07 1.35 7.67 -51.93 -0.40 0.96 15 26 H 0.29 8.88 6.79 -40.82 -0.28 8.61 15 27 H 0.35 7.30 9.06 45.56 0.41 7.72 15 LS Contribution 239.64 15.07 3.61 3.61 Total: -1.00 -31.75 239.64 -4.20 -35.95 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -2.42 Total: 6.23 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.98 Total: -13.89 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.87 Total: -38.94 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.20 Total: -11.12 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.10 Total: 18.15 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.75 -4.20 -35.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260115558.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.832 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds