Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 N 1.39852 * 125.68705 * 270.02708 * 3 2 1 5 5 C 1.30273 * 109.46455 * 179.72910 * 4 3 2 6 6 C 1.50700 * 125.90368 * 180.25324 * 5 4 3 7 7 C 1.41838 * 108.18756 * 0.38504 * 5 4 3 8 8 C 1.41288 * 126.61864 * 179.87992 * 7 5 4 9 9 H 1.08004 * 120.00190 * 27.61919 * 8 7 5 10 10 C 1.39598 * 119.99772 * 207.61933 * 8 7 5 11 11 N 1.31147 * 120.00420 * 26.22610 * 10 8 7 12 12 Si 1.86810 * 119.99742 * 206.22992 * 10 8 7 13 13 H 1.48502 * 109.46591 * 269.99601 * 12 10 8 14 14 H 1.48496 * 109.46963 * 29.99919 * 12 10 8 15 15 H 1.48498 * 109.47132 * 150.00061 * 12 10 8 16 16 C 1.34920 * 125.68996 * 89.99640 * 3 2 1 17 17 O 1.35290 * 126.51856 * 0.02751 * 16 3 2 18 18 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.47148 * 299.99705 * 1 2 3 20 20 H 1.08998 * 109.46918 * 60.00198 * 1 2 3 21 21 H 1.08995 * 109.47148 * 240.00294 * 2 1 3 22 22 H 1.08998 * 109.46918 * 119.99802 * 2 1 3 23 23 H 1.08996 * 109.47047 * 270.15576 * 6 5 4 24 24 H 1.09000 * 109.47592 * 30.15504 * 6 5 4 25 25 H 1.09005 * 109.47079 * 150.15925 * 6 5 4 26 26 H 0.97003 * 119.99397 * 5.71979 * 11 10 8 27 27 H 0.96701 * 113.99574 * 268.80375 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2898 2.1506 -1.1359 5 6 2.7014 3.3318 -0.7720 6 6 3.0905 4.4559 -1.6971 7 6 2.7229 3.3758 0.6456 8 6 3.1095 4.4719 1.4489 9 1 3.0007 5.4797 1.0761 10 6 3.6320 4.2523 2.7247 11 7 4.2385 3.1224 2.9994 12 14 3.4672 5.5679 4.0407 13 1 4.6432 6.4729 3.9856 14 1 2.2280 6.3514 3.8048 15 1 3.3995 4.9250 5.3776 16 6 2.2807 2.1234 1.0958 17 8 2.1433 1.7335 2.3840 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 4.1543 4.3877 -1.9244 24 1 2.5162 4.3818 -2.6206 25 1 2.8824 5.4114 -1.2155 26 1 4.3976 2.4739 2.2958 27 1 1.2764 1.9308 2.7643 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260115558.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = -5.373131 kcal Electronic energy + Delta-G solvation = -12623.387868 eV Core-core repulsion = 10381.857948 eV Total energy + Delta-G solvation = -2241.529919 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.54040 -37.69768 -36.00903 -34.61795 -31.76898 -30.08361 -28.22998 -26.34094 -23.71346 -21.83870 -20.74198 -19.40447 -18.04188 -17.14220 -16.00740 -15.62710 -15.39133 -15.00350 -14.59755 -14.16203 -13.95429 -13.38105 -13.13634 -13.00769 -12.73045 -12.54899 -12.40726 -12.21117 -11.89447 -11.36207 -10.98132 -10.47297 -9.61543 -9.12783 -8.83873 -5.99309 1.10275 1.57074 1.60705 1.85561 1.89266 2.18275 2.52686 3.31083 3.62358 3.88330 4.16121 4.23628 4.37967 4.56006 4.75852 4.78266 4.89654 5.05618 5.13164 5.18890 5.48460 5.76948 6.04932 6.21150 6.29706 6.82537 7.15055 7.33110 7.34097 8.44836 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.038757 B = 0.014187 C = 0.011287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.276213 B = 1973.141794 C = 2480.224992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.128 3.872 3 N -0.389 5.389 4 N -0.310 5.310 5 C -0.006 4.006 6 C -0.044 4.044 7 C -0.063 4.063 8 C -0.555 4.555 9 H 0.065 0.935 10 C -0.001 4.001 11 N -0.827 5.827 12 Si 1.118 2.882 13 H -0.269 1.269 14 H -0.268 1.268 15 H -0.279 1.279 16 C 0.080 3.920 17 O -0.450 6.450 18 H 0.103 0.897 19 H 0.046 0.954 20 H 0.050 0.950 21 H 0.092 0.908 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.267 0.733 27 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 -1.707 -2.423 6.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 N -0.188 5.188 4 N -0.139 5.139 5 C -0.171 4.171 6 C -0.103 4.103 7 C -0.074 4.074 8 C -0.588 4.588 9 H 0.083 0.917 10 C -0.214 4.214 11 N -0.452 5.452 12 Si 0.938 3.062 13 H -0.195 1.195 14 H -0.193 1.193 15 H -0.205 1.205 16 C -0.084 4.084 17 O -0.250 6.250 18 H 0.122 0.878 19 H 0.065 0.935 20 H 0.069 0.931 21 H 0.110 0.890 22 H 0.102 0.898 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -5.054 -2.497 -1.714 5.892 hybrid contribution -0.524 -0.065 -0.786 0.947 sum -5.578 -2.562 -2.500 6.628 Atomic orbital electron populations 1.22069 0.93434 1.03863 1.01623 1.21614 0.95982 0.78110 1.03633 1.48356 1.55476 1.12274 1.02674 1.76302 1.24655 1.04705 1.08238 1.22799 1.04582 0.94867 0.94882 1.19907 1.01008 0.93202 0.96152 1.18284 1.03650 0.93294 0.92144 1.19569 1.43872 0.92932 1.02418 0.91711 1.27931 0.91036 1.01221 1.01247 1.70567 1.28737 1.08384 1.37510 0.82988 0.77859 0.72614 0.72784 1.19477 1.19289 1.20456 1.18966 1.15351 0.93834 0.80280 1.84872 1.37391 1.82825 1.19884 0.87792 0.93501 0.93080 0.88956 0.89771 0.91335 0.90548 0.91052 0.92221 0.77961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 10.24 71.98 0.74 -3.50 15 2 C 0.13 4.42 7.08 86.38 0.61 5.03 15 3 N -0.39 -18.11 3.59 -456.92 -1.64 -19.75 15 4 N -0.31 -15.10 12.45 -46.41 -0.58 -15.68 15 5 C -0.01 -0.30 7.27 43.68 0.32 0.02 15 6 C -0.04 -1.74 10.26 71.24 0.73 -1.01 15 7 C -0.06 -3.50 5.34 -21.15 -0.11 -3.61 15 8 C -0.56 -31.22 8.97 23.35 0.21 -31.01 15 9 H 0.06 3.53 7.60 -2.91 -0.02 3.51 15 10 C 0.00 -0.06 4.89 85.12 0.42 0.36 15 11 N -0.83 -48.37 12.03 21.78 0.26 -48.11 15 12 Si 1.12 46.54 30.00 68.60 2.06 48.60 15 13 H -0.27 -10.51 7.11 99.48 0.71 -9.81 15 14 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 15 H -0.28 -11.50 7.11 99.48 0.71 -10.80 15 16 C 0.08 4.15 6.98 84.71 0.59 4.74 15 17 O -0.45 -22.32 11.13 -85.76 -0.95 -23.27 15 18 H 0.10 2.08 8.14 -2.39 -0.02 2.06 15 19 H 0.05 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.05 1.51 8.14 -2.39 -0.02 1.50 15 21 H 0.09 2.89 8.14 -2.39 -0.02 2.87 15 22 H 0.08 2.83 8.12 -2.39 -0.02 2.81 15 23 H 0.07 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.08 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.07 2.75 7.67 -2.38 -0.02 2.73 15 26 H 0.27 16.75 6.79 -92.71 -0.63 16.12 15 27 H 0.37 15.25 9.06 -74.06 -0.67 14.58 15 Total: -1.00 -68.18 239.64 3.29 -64.89 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.64 Total: 22.30 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.50 Total: -28.98 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.96 Total: -83.54 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.95 Total: -23.27 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.06 Total: 48.60 kcal Total: -68.18 3.29 -64.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260115558.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.515 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds