Wall clock time and date at job start Mon Mar 30 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42896 * 109.47735 * 2 1 4 4 C 1.36222 * 117.00267 * 180.02562 * 3 2 1 5 5 C 1.40113 * 126.05645 * 359.97438 * 4 3 2 6 6 N 1.30866 * 108.36063 * 179.72093 * 5 4 3 7 7 N 1.40080 * 108.32240 * 0.43721 * 6 5 4 8 8 C 1.46499 * 126.08053 * 179.81729 * 7 6 5 9 9 C 1.50701 * 109.46992 * 304.69412 * 8 7 6 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99913 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99734 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47294 * 60.00559 * 13 11 9 15 15 H 1.48503 * 109.46954 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47431 * 300.00157 * 13 11 9 17 17 C 1.35592 * 126.05034 * 179.97438 * 4 3 2 18 18 H 1.08996 * 109.47406 * 300.00490 * 1 2 3 19 19 H 1.09009 * 109.47134 * 60.00176 * 1 2 3 20 20 H 1.09001 * 109.47760 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46983 * 239.99857 * 2 1 3 22 22 H 1.08997 * 109.47120 * 120.00227 * 2 1 3 23 23 H 1.08000 * 125.81792 * 0.02562 * 5 4 3 24 24 H 1.09002 * 109.47391 * 184.69403 * 8 7 6 25 25 H 1.09001 * 109.46813 * 64.69459 * 8 7 6 26 26 H 0.97002 * 119.99768 * 179.97438 * 12 11 9 27 27 H 1.08003 * 126.21357 * 0.02638 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3569 1.5256 -0.0005 5 6 4.3228 0.5106 -0.0006 6 7 5.5067 1.0682 -0.0072 7 7 5.3385 2.4589 -0.0015 8 6 6.4103 3.4576 -0.0021 9 6 7.3338 3.2041 1.1615 10 1 7.1417 2.3811 1.8340 11 6 8.4244 4.0222 1.3670 12 7 8.6585 5.0241 0.5478 13 14 9.5694 3.7076 2.8089 14 1 10.1578 2.3495 2.6867 15 1 10.6558 4.7200 2.8084 16 1 8.8048 3.8034 4.0784 17 6 4.0044 2.7169 -0.0011 18 1 -0.3634 0.5139 0.8899 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3635 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8899 23 1 4.1241 -0.5510 -0.0006 24 1 5.9783 4.4543 0.0873 25 1 6.9718 3.3873 -0.9337 26 1 9.4256 5.5999 0.6926 27 1 3.5435 3.6937 -0.0008 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260123774.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:40 Heat of formation + Delta-G solvation = 30.901186 kcal Electronic energy + Delta-G solvation = -11825.089782 eV Core-core repulsion = 9585.132836 eV Total energy + Delta-G solvation = -2239.956947 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.44569 -37.65201 -33.57287 -31.64055 -31.25978 -28.67582 -26.60396 -23.53037 -22.92166 -20.36886 -19.78149 -17.44917 -16.47850 -15.73624 -15.09659 -14.52009 -14.24354 -14.02719 -13.32291 -12.63091 -12.58482 -12.11096 -12.04886 -11.60973 -11.25296 -11.02208 -10.84133 -10.47792 -10.25103 -9.94334 -9.61973 -8.68921 -8.48672 -7.16106 -6.24075 -4.29575 2.70667 3.26527 3.29575 3.30984 3.39310 3.43715 3.92631 4.32046 5.05289 5.10833 5.14307 5.34648 5.39118 5.58408 5.77895 5.87167 5.99405 6.12580 6.34997 6.73144 6.99353 7.14723 7.68970 7.86230 7.90206 8.05841 8.53962 8.78694 9.36025 10.84558 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.081816 B = 0.007034 C = 0.006815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 342.149056 B = 3979.845136 C = 4107.469983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.312 6.312 4 C -0.058 4.058 5 C -0.039 4.039 6 N -0.260 5.260 7 N -0.319 5.319 8 C 0.261 3.739 9 C -0.531 4.531 10 H 0.069 0.931 11 C 0.063 3.937 12 N -0.895 5.895 13 Si 0.909 3.091 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.019 3.981 18 H 0.063 0.937 19 H 0.062 0.938 20 H 0.072 0.928 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.170 0.830 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.268 0.732 27 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.391 -6.504 -0.941 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.225 6.225 4 C -0.113 4.113 5 C -0.223 4.223 6 N -0.086 5.086 7 N -0.106 5.106 8 C 0.144 3.856 9 C -0.569 4.569 10 H 0.087 0.913 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.736 3.264 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.129 4.129 18 H 0.082 0.918 19 H 0.082 0.918 20 H 0.090 0.910 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.187 0.813 24 H 0.074 0.926 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.067 -6.289 -0.990 11.912 hybrid contribution -0.163 -0.169 0.741 0.777 sum -10.230 -6.459 -0.249 12.101 Atomic orbital electron populations 1.21741 0.93610 1.02193 1.03145 1.22504 0.94963 0.83113 1.00679 1.85903 1.17403 1.27259 1.91953 1.18534 0.83168 0.93210 1.16370 1.23762 0.90480 0.99398 1.08629 1.77295 1.21358 0.89097 1.20871 1.49346 1.04920 1.04733 1.51580 1.19737 0.82926 0.83655 0.99316 1.21227 1.09669 1.14816 1.11225 0.91315 1.24941 0.97384 0.94630 0.97064 1.69910 1.29257 1.17009 1.37160 0.86368 0.79848 0.78183 0.81994 1.19875 1.21018 1.20017 1.21564 0.84887 0.98102 1.08349 0.91808 0.91844 0.90951 0.92986 0.92948 0.81283 0.92572 0.93560 0.92232 0.81153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 37.15 0.38 -1.05 15 2 C 0.06 0.79 5.80 37.15 0.22 1.01 15 3 O -0.31 -5.28 10.23 -20.45 -0.21 -5.48 15 4 C -0.06 -1.12 6.96 -39.82 -0.28 -1.40 15 5 C -0.04 -0.76 11.07 -17.26 -0.19 -0.95 15 6 N -0.26 -6.07 12.41 30.68 0.38 -5.69 15 7 N -0.32 -7.54 3.69 -62.23 -0.23 -7.77 15 8 C 0.26 6.71 6.27 -5.19 -0.03 6.68 15 9 C -0.53 -14.92 9.24 -34.44 -0.32 -15.24 15 10 H 0.07 1.99 7.81 -52.49 -0.41 1.58 15 11 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 12 N -0.90 -25.46 13.29 55.43 0.74 -24.73 15 13 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 15 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 17 C 0.02 0.38 11.51 -16.70 -0.19 0.19 15 18 H 0.06 0.62 8.14 -51.93 -0.42 0.19 15 19 H 0.06 0.60 8.14 -51.92 -0.42 0.18 15 20 H 0.07 0.52 8.14 -51.93 -0.42 0.10 15 21 H 0.05 0.60 8.10 -51.93 -0.42 0.18 15 22 H 0.05 0.62 8.10 -51.93 -0.42 0.20 15 23 H 0.17 2.62 7.69 -52.49 -0.40 2.22 15 24 H 0.06 1.42 8.07 -51.93 -0.42 1.00 15 25 H 0.05 1.25 8.14 -51.93 -0.42 0.83 15 26 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 27 H 0.17 2.98 8.06 -52.48 -0.42 2.55 15 LS Contribution 245.79 15.07 3.70 3.70 Total: -1.00 -30.48 245.79 -4.47 -34.96 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -3.32 Total: -2.31 kcal Atomic # 6 Polarization: -8.62 SS G_CDS: -0.51 Total: -9.13 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.89 Total: -38.18 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.21 Total: -5.48 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.48 -4.47 -34.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260123774.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.856 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds