Wall clock time and date at job start Mon Mar 30 2020 02:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46941 * 2 1 4 4 O 1.42898 * 109.47321 * 240.00261 * 2 1 3 5 5 C 1.36185 * 117.00003 * 269.99656 * 4 2 1 6 6 C 1.40504 * 126.05007 * 359.69392 * 5 4 2 7 7 N 1.30949 * 108.41138 * 179.81177 * 6 5 4 8 8 N 1.40083 * 108.35336 * 0.44216 * 7 6 5 9 9 C 1.37337 * 126.09264 * 179.71564 * 8 7 6 10 10 H 1.08009 * 119.99941 * 174.12824 * 9 8 7 11 11 C 1.38985 * 120.00399 * 354.13128 * 9 8 7 12 12 N 1.31299 * 119.99488 * 5.93006 * 11 9 8 13 13 Si 1.86803 * 120.00299 * 185.93413 * 11 9 8 14 14 H 1.48493 * 109.47024 * 94.97728 * 13 11 9 15 15 H 1.48493 * 109.46853 * 214.97966 * 13 11 9 16 16 H 1.48500 * 109.46527 * 334.97679 * 13 11 9 17 17 C 1.35502 * 126.05464 * 179.97438 * 5 4 2 18 18 H 1.09007 * 109.46626 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.47438 * 60.00286 * 1 2 3 20 20 H 1.09005 * 109.47170 * 299.99742 * 1 2 3 21 21 H 1.08998 * 109.47200 * 120.00170 * 2 1 3 22 22 H 1.08997 * 109.47137 * 60.00425 * 3 2 1 23 23 H 1.08998 * 109.46878 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.46821 * 300.00091 * 3 2 1 25 25 H 1.08004 * 125.79390 * 359.97438 * 6 5 4 26 26 H 0.97001 * 119.99299 * 180.02562 * 12 11 9 27 27 H 1.08000 * 126.23528 * 359.96648 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2125 -2.0159 -1.0649 6 6 2.0060 -2.7994 0.0830 7 7 2.3069 -4.0410 -0.2042 8 7 2.7256 -4.0958 -1.5399 9 6 3.1313 -5.2209 -2.2151 10 1 3.3444 -5.1686 -3.2726 11 6 3.2676 -6.4268 -1.5376 12 7 2.8982 -6.5191 -0.2810 13 14 3.9764 -7.9160 -2.4146 14 1 5.4333 -8.0044 -2.1414 15 1 3.3050 -9.1459 -1.9230 16 1 3.7541 -7.7815 -3.8767 17 6 2.6581 -2.8314 -2.0510 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 0.5138 0.8900 21 1 1.8933 -0.5138 0.8899 22 1 1.6767 1.9564 0.8900 23 1 3.1299 1.4426 -0.0005 24 1 1.6766 1.9563 -0.8899 25 1 1.6558 -2.4392 1.0390 26 1 2.9936 -7.3606 0.1919 27 1 2.9131 -2.5353 -3.0579 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260204149.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:58 Heat of formation + Delta-G solvation = 34.797253 kcal Electronic energy + Delta-G solvation = -12161.892645 eV Core-core repulsion = 9922.104644 eV Total energy + Delta-G solvation = -2239.788001 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.60727 -37.43066 -33.44313 -32.31530 -30.22508 -27.59640 -26.94627 -24.79836 -21.70270 -20.27798 -19.32217 -17.61823 -15.99345 -15.31348 -14.55279 -14.32720 -13.96583 -13.25589 -13.02256 -12.69318 -12.27012 -12.03594 -11.69735 -11.58264 -11.18936 -10.99349 -10.82748 -10.49363 -10.38377 -10.13831 -9.23486 -8.72724 -8.08521 -6.67745 -6.52839 -4.19239 2.99325 3.08208 3.13207 3.63410 3.82102 4.21683 4.25667 4.84041 5.04257 5.24673 5.39229 5.57533 5.79259 5.96976 6.02287 6.13010 6.22703 6.40320 6.53867 6.68276 6.86416 7.06207 7.35193 7.62881 8.02011 8.57706 8.83019 9.42045 9.65813 10.44344 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.096836 B = 0.008113 C = 0.007789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 289.080127 B = 3450.562099 C = 3593.866601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.087 3.913 3 C -0.146 4.146 4 O -0.310 6.310 5 C -0.067 4.067 6 C -0.109 4.109 7 N -0.246 5.246 8 N -0.144 5.144 9 C -0.321 4.321 10 H 0.117 0.883 11 C 0.046 3.954 12 N -0.776 5.776 13 Si 0.935 3.065 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.079 4.079 18 H 0.061 0.939 19 H 0.058 0.942 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.150 0.850 26 H 0.273 0.727 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 7.001 -0.182 7.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.029 3.971 3 C -0.204 4.204 4 O -0.224 6.224 5 C -0.123 4.123 6 C -0.282 4.282 7 N -0.081 5.081 8 N 0.084 4.916 9 C -0.454 4.454 10 H 0.135 0.865 11 C -0.170 4.170 12 N -0.404 5.404 13 Si 0.759 3.241 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.188 1.188 17 C -0.225 4.225 18 H 0.081 0.919 19 H 0.077 0.923 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.084 0.916 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.167 0.833 26 H 0.084 0.916 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.185 5.813 0.274 5.939 hybrid contribution 0.130 0.158 -0.393 0.443 sum -1.055 5.971 -0.119 6.065 Atomic orbital electron populations 1.22277 0.96410 1.02728 1.01505 1.22005 0.93353 0.92695 0.89008 1.21841 1.01738 0.94892 1.01900 1.85847 1.83679 1.17594 1.35291 1.18253 1.15660 0.83050 0.95347 1.23538 1.13296 0.93014 0.98367 1.78107 1.20291 1.16027 0.93660 1.44481 1.36230 1.04040 1.06864 1.19883 1.46153 0.84999 0.94320 0.86543 1.25618 0.96112 0.99548 0.95752 1.70221 1.35195 1.26209 1.08737 0.85808 0.79158 0.79554 0.79618 1.19677 1.20169 1.18764 1.20946 1.17206 0.85311 0.99079 0.91941 0.92313 0.92294 0.91873 0.91568 0.92139 0.92135 0.83279 0.91618 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.53 37.16 0.35 -2.22 15 2 C 0.09 1.47 3.09 -26.73 -0.08 1.38 15 3 C -0.15 -1.95 9.56 37.16 0.36 -1.59 15 4 O -0.31 -6.68 9.87 -20.33 -0.20 -6.88 15 5 C -0.07 -1.66 6.94 -39.71 -0.28 -1.94 15 6 C -0.11 -2.78 10.91 -17.07 -0.19 -2.96 15 7 N -0.25 -7.17 10.43 30.78 0.32 -6.85 15 8 N -0.14 -4.08 3.74 -11.43 -0.04 -4.12 15 9 C -0.32 -8.75 10.24 -14.81 -0.15 -8.90 15 10 H 0.12 2.86 7.84 -52.48 -0.41 2.45 15 11 C 0.05 1.21 5.50 -17.50 -0.10 1.11 15 12 N -0.78 -21.83 11.84 55.49 0.66 -21.18 15 13 Si 0.93 19.23 29.56 -169.99 -5.02 14.21 15 14 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 17 C -0.08 -2.03 11.49 -16.43 -0.19 -2.22 15 18 H 0.06 1.05 8.14 -51.93 -0.42 0.63 15 19 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 20 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.06 1.09 6.35 -51.93 -0.33 0.76 15 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.15 3.33 7.00 -52.48 -0.37 2.96 15 26 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 27 H 0.15 3.39 8.06 -52.49 -0.42 2.96 15 LS Contribution 240.42 15.07 3.62 3.62 Total: -1.00 -31.36 240.42 -4.14 -35.50 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -3.20 Total: 3.04 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.27 Total: -17.34 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.94 Total: -32.15 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.20 Total: -6.88 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.36 -4.14 -35.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260204149.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.296 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds