Wall clock time and date at job start Mon Mar 30 2020 02:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36180 * 117.00327 * 2 1 4 4 C 1.40504 * 126.04597 * 270.02203 * 3 2 1 5 5 C 1.50697 * 125.80077 * 359.94168 * 4 3 2 6 6 N 1.30959 * 108.40487 * 179.71460 * 4 3 2 7 7 N 1.40075 * 108.35616 * 0.40626 * 6 4 3 8 8 C 1.37343 * 126.09049 * 179.85326 * 7 6 4 9 9 H 1.07997 * 119.99654 * 186.10666 * 8 7 6 10 10 C 1.38983 * 119.99963 * 6.10807 * 8 7 6 11 11 N 1.31295 * 120.00082 * 6.46309 * 10 8 7 12 12 Si 1.86804 * 119.99518 * 186.18147 * 10 8 7 13 13 H 1.48500 * 109.47218 * 265.29774 * 12 10 8 14 14 H 1.48494 * 109.47226 * 25.30175 * 12 10 8 15 15 H 1.48502 * 109.46940 * 145.29877 * 12 10 8 16 16 C 1.35497 * 126.05370 * 89.99022 * 3 2 1 17 17 C 1.50694 * 126.24013 * 0.02694 * 16 3 2 18 18 H 1.09005 * 109.46743 * 180.02562 * 1 2 3 19 19 H 1.08995 * 109.47137 * 300.00828 * 1 2 3 20 20 H 1.09002 * 109.46437 * 60.00800 * 1 2 3 21 21 H 1.08999 * 109.47016 * 89.99762 * 5 4 3 22 22 H 1.08996 * 109.47352 * 209.99931 * 5 4 3 23 23 H 1.09003 * 109.46707 * 330.00273 * 5 4 3 24 24 H 0.97004 * 119.99488 * 179.72802 * 11 10 8 25 25 H 1.09003 * 109.47425 * 269.97110 * 17 16 3 26 26 H 1.09000 * 109.47555 * 29.97276 * 17 16 3 27 27 H 1.09000 * 109.47572 * 149.97258 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0473 1.2133 0.0000 4 6 2.4223 1.9502 -1.1360 5 6 2.2098 1.5315 -2.5680 6 7 2.9836 3.0649 -0.7392 7 7 2.9967 3.0778 0.6615 8 6 3.5045 4.0760 1.4566 9 1 3.5531 3.9415 2.5270 10 6 3.9559 5.2590 0.8835 11 7 3.7814 5.4753 -0.3997 12 14 4.8037 6.5447 1.9407 13 1 3.8080 7.5502 2.3911 14 1 5.4142 5.8881 3.1244 15 1 5.8629 7.2180 1.1470 16 6 2.4092 1.9239 1.0954 17 6 2.2014 1.5154 2.5310 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5139 0.8899 20 1 -0.3632 0.5137 -0.8901 21 1 1.2425 1.8964 -2.9134 22 1 2.9999 1.9514 -3.1904 23 1 2.2331 0.4439 -2.6358 24 1 4.0929 6.3027 -0.7987 25 1 1.2357 1.8836 2.8774 26 1 2.2241 0.4283 2.6064 27 1 2.9942 1.9389 3.1477 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260238447.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:01 Heat of formation + Delta-G solvation = 8.319997 kcal Electronic energy + Delta-G solvation = -12493.938225 eV Core-core repulsion = 10253.002085 eV Total energy + Delta-G solvation = -2240.936141 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.65219 -38.37882 -35.48745 -33.77325 -31.54753 -29.68689 -28.29730 -26.67995 -25.75456 -21.26953 -20.90612 -19.17738 -17.27388 -17.17694 -16.45804 -15.83838 -15.34092 -15.05181 -14.46710 -14.02180 -13.89982 -13.51651 -13.33474 -13.14152 -12.87009 -12.73674 -12.49823 -12.40181 -12.07039 -11.25449 -11.16596 -10.25179 -9.87099 -8.90058 -8.51522 -6.27899 1.21357 1.38185 1.55982 1.65294 1.97840 2.10669 2.69319 3.02430 3.45246 4.21927 4.31975 4.54287 4.60861 4.71989 4.73371 4.81584 4.82733 4.85237 4.92390 5.07560 5.19258 5.25404 5.61735 5.83738 6.06733 6.60726 7.06148 7.43241 7.63584 8.48900 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.050504 B = 0.011920 C = 0.009979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.277081 B = 2348.366965 C = 2805.104113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C -0.105 4.105 4 C -0.048 4.048 5 C -0.043 4.043 6 N -0.304 5.304 7 N -0.167 5.167 8 C -0.356 4.356 9 H 0.135 0.865 10 C -0.001 4.001 11 N -0.824 5.824 12 Si 1.017 2.983 13 H -0.262 1.262 14 H -0.247 1.247 15 H -0.274 1.274 16 C -0.056 4.056 17 C -0.054 4.054 18 H 0.114 0.886 19 H 0.033 0.967 20 H 0.032 0.968 21 H 0.068 0.932 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.278 0.722 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 -4.049 3.481 6.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C -0.162 4.162 4 C -0.205 4.205 5 C -0.101 4.101 6 N -0.136 5.136 7 N 0.064 4.936 8 C -0.487 4.487 9 H 0.152 0.848 10 C -0.213 4.213 11 N -0.451 5.451 12 Si 0.835 3.165 13 H -0.186 1.186 14 H -0.170 1.170 15 H -0.199 1.199 16 C -0.187 4.187 17 C -0.112 4.112 18 H 0.132 0.868 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.086 0.914 22 H 0.077 0.923 23 H 0.099 0.901 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.654 -2.983 2.940 4.958 hybrid contribution -0.266 0.141 0.287 0.416 sum -2.919 -2.841 3.227 5.197 Atomic orbital electron populations 1.23112 0.80789 1.03313 0.99647 1.86013 1.19621 1.23405 1.94050 1.17707 1.14817 0.93001 0.90693 1.23166 1.05135 0.94140 0.98041 1.19855 1.01389 1.01155 0.87749 1.78042 1.26711 1.19200 0.89660 1.44728 1.33635 1.11365 1.03862 1.20516 1.42348 0.93980 0.91815 0.84750 1.26829 0.96488 1.00462 0.97539 1.70339 1.36910 1.25020 1.12877 0.84617 0.77733 0.76351 0.77752 1.18642 1.17020 1.19920 1.21482 1.07994 0.91241 0.98028 1.20043 1.01826 1.01661 0.87703 0.86760 0.94786 0.94927 0.91360 0.92329 0.90100 0.91232 0.91134 0.89953 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.14 113.37 1.26 2.13 15 2 O -0.32 -13.40 10.53 -95.61 -1.01 -14.41 15 3 C -0.11 -5.23 6.16 22.19 0.14 -5.09 15 4 C -0.05 -2.54 7.23 43.24 0.31 -2.22 15 5 C -0.04 -1.76 10.44 71.23 0.74 -1.01 15 6 N -0.30 -18.20 10.48 -46.93 -0.49 -18.69 15 7 N -0.17 -9.60 3.74 -178.38 -0.67 -10.26 15 8 C -0.36 -19.37 9.97 84.01 0.84 -18.53 15 9 H 0.14 6.49 7.04 -2.91 -0.02 6.47 15 10 C 0.00 -0.08 5.48 84.95 0.47 0.39 15 11 N -0.82 -47.24 11.90 21.66 0.26 -46.98 15 12 Si 1.02 38.88 29.56 68.60 2.03 40.91 15 13 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 14 H -0.25 -8.71 7.11 99.48 0.71 -8.01 15 15 H -0.27 -10.33 7.11 99.48 0.71 -9.62 15 16 C -0.06 -2.84 6.94 41.19 0.29 -2.56 15 17 C -0.05 -2.08 10.05 71.23 0.72 -1.37 15 18 H 0.11 2.75 8.14 -2.38 -0.02 2.73 15 19 H 0.03 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.03 1.04 8.14 -2.39 -0.02 1.02 15 21 H 0.07 2.54 8.14 -2.39 -0.02 2.52 15 22 H 0.06 2.35 8.14 -2.39 -0.02 2.33 15 23 H 0.08 2.92 8.14 -2.39 -0.02 2.90 15 24 H 0.28 14.56 8.31 -92.71 -0.77 13.79 15 25 H 0.07 2.46 8.14 -2.39 -0.02 2.44 15 26 H 0.08 2.83 8.14 -2.39 -0.02 2.82 15 27 H 0.07 2.43 7.33 -2.39 -0.02 2.41 15 Total: -1.00 -69.70 242.73 6.04 -63.66 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 1.16 Total: 14.03 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 4.76 Total: -28.26 kcal Atomic # 7 Polarization: -75.03 SS G_CDS: -0.90 Total: -75.93 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -1.01 Total: -14.41 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -69.70 6.04 -63.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238447.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.985 kcal (2) G-P(sol) polarization free energy of solvation -69.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds