Wall clock time and date at job start Mon Mar 30 2020 02:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46601 * 2 1 4 4 C 1.50696 * 109.46734 * 119.99628 * 2 1 3 5 5 N 1.29974 * 127.24429 * 299.97737 * 4 2 1 6 6 O 1.20538 * 113.30058 * 180.02562 * 5 4 2 7 7 C 1.34129 * 113.21857 * 359.70425 * 6 5 4 8 8 N 1.36957 * 127.21383 * 180.30446 * 7 6 5 9 9 C 1.41183 * 105.57354 * 0.45922 * 7 6 5 10 10 C 1.41103 * 128.80330 * 179.85384 * 9 7 6 11 11 H 1.08002 * 120.00030 * 218.39808 * 10 9 7 12 12 C 1.39572 * 120.00074 * 38.39759 * 10 9 7 13 13 N 1.31204 * 120.00282 * 203.44445 * 12 10 9 14 14 Si 1.86802 * 119.99974 * 23.72512 * 12 10 9 15 15 H 1.48500 * 109.46895 * 264.25422 * 14 12 10 16 16 H 1.48499 * 109.47292 * 24.25200 * 14 12 10 17 17 H 1.48496 * 109.47347 * 144.25700 * 14 12 10 18 18 H 1.08990 * 109.47741 * 300.00031 * 1 2 3 19 19 H 1.09007 * 109.46863 * 60.00360 * 1 2 3 20 20 H 1.09006 * 109.46785 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47262 * 239.99767 * 2 1 3 22 22 H 1.09001 * 109.47354 * 59.99939 * 3 2 1 23 23 H 1.09002 * 109.46892 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47035 * 299.99200 * 3 2 1 25 25 H 0.96999 * 120.00472 * 189.67461 * 8 7 6 26 26 H 0.96996 * 119.99799 * 9.67428 * 8 7 6 27 27 H 0.96998 * 120.00263 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 1.8070 -0.3910 2.4701 6 8 2.3341 -1.1359 3.2577 7 6 3.0249 -2.1241 2.6700 8 7 3.7248 -3.1263 3.2876 9 6 2.8824 -1.9125 1.2815 10 6 3.4143 -2.6653 0.2131 11 1 3.7765 -2.1645 -0.6726 12 6 3.4724 -4.0570 0.3010 13 7 4.3400 -4.7244 -0.4224 14 14 2.3095 -4.9701 1.4426 15 1 2.9892 -5.2299 2.7371 16 1 1.0969 -4.1455 1.6770 17 1 1.9179 -6.2608 0.8214 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.6765 1.9564 0.8900 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 4.3025 -3.7063 2.7673 26 1 3.6427 -3.2562 4.2453 27 1 4.3806 -5.6916 -0.3610 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260264182.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:25 Heat of formation + Delta-G solvation = 44.045169 kcal Electronic energy + Delta-G solvation = -12650.940060 eV Core-core repulsion = 10411.553080 eV Total energy + Delta-G solvation = -2239.386981 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.91258 -35.47063 -34.70017 -32.79302 -30.87433 -28.67245 -26.62093 -25.58017 -22.40705 -20.72646 -18.75670 -17.44757 -16.36440 -16.17154 -15.39775 -14.80091 -14.08905 -13.60457 -13.08293 -12.70048 -12.58301 -11.74121 -11.68098 -11.26708 -10.77968 -10.70631 -10.63288 -10.49795 -10.14485 -9.72616 -9.53878 -8.86512 -8.34533 -6.73300 -6.61541 -4.10872 3.04650 3.12453 3.24434 3.40881 3.71690 3.99499 4.18598 5.04593 5.21716 5.45849 5.74558 5.78729 5.99733 6.08270 6.16955 6.31568 6.44898 6.57336 6.77854 6.79724 6.95182 7.25723 7.59268 8.33049 8.44530 8.54984 8.78935 9.05242 9.91961 10.43439 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.036911 B = 0.015683 C = 0.013334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.400876 B = 1784.972629 C = 2099.358321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.003 4.003 3 C -0.138 4.138 4 C -0.003 4.003 5 N -0.398 5.398 6 O 0.050 5.950 7 C 0.086 3.914 8 N -0.829 5.829 9 C -0.071 4.071 10 C -0.438 4.438 11 H 0.085 0.915 12 C 0.080 3.920 13 N -0.840 5.840 14 Si 0.896 3.104 15 H -0.262 1.262 16 H -0.264 1.264 17 H -0.296 1.296 18 H 0.052 0.948 19 H 0.052 0.948 20 H 0.054 0.946 21 H 0.090 0.910 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.416 0.584 26 H 0.388 0.612 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.249 3.171 2.778 5.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 C -0.196 4.196 4 C -0.162 4.162 5 N -0.113 5.113 6 O -0.008 6.008 7 C -0.076 4.076 8 N -0.387 5.387 9 C -0.083 4.083 10 C -0.471 4.471 11 H 0.103 0.897 12 C -0.132 4.132 13 N -0.470 5.470 14 Si 0.723 3.277 15 H -0.187 1.187 16 H -0.188 1.188 17 H -0.224 1.224 18 H 0.071 0.929 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.108 0.892 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.251 0.749 26 H 0.215 0.785 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.879 4.034 3.218 6.455 hybrid contribution 0.141 -1.453 0.197 1.473 sum -3.737 2.581 3.414 5.682 Atomic orbital electron populations 1.21769 0.95117 1.01713 1.00954 1.19258 0.94748 0.94369 0.93847 1.21791 1.01141 0.95703 1.00983 1.24247 1.00106 0.99556 0.92262 1.72964 1.21020 1.14959 1.02378 1.84245 1.52871 1.30145 1.33536 1.20724 1.04154 0.92092 0.90630 1.40582 1.53210 1.34788 1.10093 1.19148 1.01441 0.97663 0.90044 1.17953 1.36910 0.90184 1.02032 0.89673 1.25741 0.94246 0.97668 0.95551 1.69902 1.29521 1.08975 1.38571 0.86643 0.82924 0.77977 0.80158 1.18747 1.18822 1.22354 0.92862 0.92932 0.92714 0.89221 0.92855 0.92789 0.92955 0.74902 0.78511 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.17 37.16 0.34 -2.04 15 2 C 0.00 -0.06 3.37 -91.77 -0.31 -0.37 15 3 C -0.14 -2.34 9.18 37.16 0.34 -2.00 15 4 C 0.00 -0.08 6.09 -79.69 -0.49 -0.57 15 5 N -0.40 -9.46 11.94 35.02 0.42 -9.04 15 6 O 0.05 1.18 11.08 17.04 0.19 1.37 15 7 C 0.09 2.04 7.48 -14.15 -0.11 1.93 15 8 N -0.83 -16.85 6.67 31.45 0.21 -16.64 15 9 C -0.07 -1.83 5.21 -104.00 -0.54 -2.37 15 10 C -0.44 -11.96 9.72 -38.00 -0.37 -12.33 15 11 H 0.09 2.46 8.06 -52.49 -0.42 2.04 15 12 C 0.08 2.12 4.89 -17.32 -0.08 2.04 15 13 N -0.84 -22.80 13.95 55.53 0.77 -22.03 15 14 Si 0.90 20.91 24.55 -169.99 -4.17 16.74 15 15 H -0.26 -5.52 5.98 56.52 0.34 -5.18 15 16 H -0.26 -6.65 7.11 56.52 0.40 -6.25 15 17 H -0.30 -6.88 7.11 56.52 0.40 -6.47 15 18 H 0.05 0.92 8.14 -51.93 -0.42 0.49 15 19 H 0.05 0.75 8.14 -51.92 -0.42 0.32 15 20 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 21 H 0.09 1.81 7.98 -51.93 -0.41 1.39 15 22 H 0.05 0.91 8.14 -51.93 -0.42 0.48 15 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.05 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.42 8.61 6.56 -40.82 -0.27 8.34 15 26 H 0.39 6.48 8.95 -40.82 -0.37 6.11 15 27 H 0.28 6.88 8.30 -40.82 -0.34 6.54 15 LS Contribution 232.19 15.07 3.50 3.50 Total: -1.00 -29.09 232.19 -3.50 -32.59 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -3.20 Total: 9.22 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -1.21 Total: -15.70 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 1.40 Total: -47.71 kcal Atomic # 8 Polarization: 1.18 SS G_CDS: 0.19 Total: 1.37 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.17 Total: 16.74 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -29.09 -3.50 -32.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260264182.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.635 kcal (2) G-P(sol) polarization free energy of solvation -29.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds