Wall clock time and date at job start Mon Mar 30 2020 02:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46601 * 2 1 4 4 C 1.50696 * 109.46734 * 119.99628 * 2 1 3 5 5 N 1.29974 * 127.24429 * 299.97737 * 4 2 1 6 6 O 1.20538 * 113.30058 * 180.02562 * 5 4 2 7 7 C 1.34129 * 113.21857 * 359.70425 * 6 5 4 8 8 N 1.36957 * 127.21383 * 180.30446 * 7 6 5 9 9 C 1.41183 * 105.57354 * 0.45922 * 7 6 5 10 10 C 1.41103 * 128.80330 * 179.85384 * 9 7 6 11 11 H 1.08002 * 120.00030 * 218.39808 * 10 9 7 12 12 C 1.39572 * 120.00074 * 38.39759 * 10 9 7 13 13 N 1.31204 * 120.00282 * 203.44445 * 12 10 9 14 14 Si 1.86802 * 119.99974 * 23.72512 * 12 10 9 15 15 H 1.48500 * 109.46895 * 264.25422 * 14 12 10 16 16 H 1.48499 * 109.47292 * 24.25200 * 14 12 10 17 17 H 1.48496 * 109.47347 * 144.25700 * 14 12 10 18 18 H 1.08990 * 109.47741 * 300.00031 * 1 2 3 19 19 H 1.09007 * 109.46863 * 60.00360 * 1 2 3 20 20 H 1.09006 * 109.46785 * 179.97438 * 1 2 3 21 21 H 1.08992 * 109.47262 * 239.99767 * 2 1 3 22 22 H 1.09001 * 109.47354 * 59.99939 * 3 2 1 23 23 H 1.09002 * 109.46892 * 179.97438 * 3 2 1 24 24 H 1.08999 * 109.47035 * 299.99200 * 3 2 1 25 25 H 0.96999 * 120.00472 * 189.67461 * 8 7 6 26 26 H 0.96996 * 119.99799 * 9.67428 * 8 7 6 27 27 H 0.96998 * 120.00263 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 1.8070 -0.3910 2.4701 6 8 2.3341 -1.1359 3.2577 7 6 3.0249 -2.1241 2.6700 8 7 3.7248 -3.1263 3.2876 9 6 2.8824 -1.9125 1.2815 10 6 3.4143 -2.6653 0.2131 11 1 3.7765 -2.1645 -0.6726 12 6 3.4724 -4.0570 0.3010 13 7 4.3400 -4.7244 -0.4224 14 14 2.3095 -4.9701 1.4426 15 1 2.9892 -5.2299 2.7371 16 1 1.0969 -4.1455 1.6770 17 1 1.9179 -6.2608 0.8214 18 1 -0.3634 0.5138 0.8899 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.6765 1.9564 0.8900 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 4.3025 -3.7063 2.7673 26 1 3.6427 -3.2562 4.2453 27 1 4.3806 -5.6916 -0.3610 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260264182.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:25 Heat of formation + Delta-G solvation = 23.035950 kcal Electronic energy + Delta-G solvation = -12651.851089 eV Core-core repulsion = 10411.553080 eV Total energy + Delta-G solvation = -2240.298009 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.80233 -37.10444 -36.53499 -34.72599 -32.68571 -30.56806 -27.98506 -27.54665 -24.06070 -22.65221 -20.50866 -19.39713 -18.16826 -18.05307 -17.19227 -16.71106 -15.67665 -15.36057 -14.80536 -14.46552 -14.07301 -13.63123 -13.11754 -13.00960 -12.53635 -12.43344 -12.28807 -12.14289 -11.84693 -11.63261 -11.33040 -10.75683 -10.22888 -8.65242 -8.59158 -6.15113 1.16235 1.27196 1.35435 1.51630 1.80505 2.13651 2.26964 3.03051 3.56776 3.82315 4.13310 4.33030 4.44992 4.59095 4.81320 4.85488 4.96113 4.97084 5.08401 5.33300 5.39702 5.53379 5.69954 6.29100 6.55977 6.75071 6.93555 7.01337 8.04380 8.47891 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.036911 B = 0.015683 C = 0.013334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.400876 B = 1784.972629 C = 2099.358321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.012 4.012 3 C -0.129 4.129 4 C -0.001 4.001 5 N -0.404 5.404 6 O 0.047 5.953 7 C 0.105 3.895 8 N -0.814 5.814 9 C -0.116 4.116 10 C -0.456 4.456 11 H 0.050 0.950 12 C 0.049 3.951 13 N -0.876 5.876 14 Si 0.947 3.053 15 H -0.223 1.223 16 H -0.290 1.290 17 H -0.291 1.291 18 H 0.053 0.947 19 H 0.087 0.913 20 H 0.039 0.961 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.086 0.914 25 H 0.417 0.583 26 H 0.409 0.591 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 3.315 3.868 6.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.032 4.032 3 C -0.187 4.187 4 C -0.160 4.160 5 N -0.121 5.121 6 O -0.008 6.008 7 C -0.058 4.058 8 N -0.374 5.374 9 C -0.128 4.128 10 C -0.490 4.490 11 H 0.068 0.932 12 C -0.160 4.160 13 N -0.507 5.507 14 Si 0.772 3.228 15 H -0.147 1.147 16 H -0.216 1.216 17 H -0.219 1.219 18 H 0.072 0.928 19 H 0.106 0.894 20 H 0.058 0.942 21 H 0.095 0.905 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.105 0.895 25 H 0.252 0.748 26 H 0.240 0.760 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.636 4.162 4.359 7.604 hybrid contribution 0.398 -1.423 -0.135 1.484 sum -4.238 2.739 4.225 6.581 Atomic orbital electron populations 1.21719 0.92986 1.01333 1.02749 1.19484 0.96555 0.95549 0.91575 1.21723 1.00340 0.93949 1.02703 1.24854 0.98923 0.98763 0.93439 1.72944 1.21619 1.15218 1.02313 1.84251 1.52984 1.30085 1.33492 1.20948 1.02530 0.91875 0.90427 1.40637 1.52041 1.33379 1.11342 1.19284 1.03476 0.99424 0.90642 1.17846 1.38417 0.90994 1.01777 0.93180 1.26274 0.94960 0.97765 0.96984 1.69931 1.30794 1.09717 1.40274 0.85872 0.80090 0.76441 0.80411 1.14674 1.21588 1.21867 0.92782 0.89390 0.94184 0.90503 0.92807 0.94005 0.89503 0.74764 0.76040 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.17 71.98 0.66 -3.60 15 2 C -0.01 -0.47 3.37 -11.54 -0.04 -0.51 15 3 C -0.13 -4.16 9.18 71.98 0.66 -3.50 15 4 C 0.00 -0.05 6.09 45.22 0.28 0.22 15 5 N -0.40 -18.74 11.94 -43.38 -0.52 -19.26 15 6 O 0.05 2.14 11.08 71.27 0.79 2.93 15 7 C 0.11 4.86 7.48 84.62 0.63 5.50 15 8 N -0.81 -31.00 6.67 -165.60 -1.10 -32.10 15 9 C -0.12 -5.98 5.21 -19.46 -0.10 -6.08 15 10 C -0.46 -25.56 9.72 23.30 0.23 -25.34 15 11 H 0.05 3.05 8.06 -2.91 -0.02 3.03 15 12 C 0.05 2.62 4.89 85.11 0.42 3.03 15 13 N -0.88 -47.95 13.95 21.78 0.30 -47.65 15 14 Si 0.95 42.25 24.55 68.60 1.68 43.93 15 15 H -0.22 -8.45 5.98 99.48 0.60 -7.85 15 16 H -0.29 -14.21 7.11 99.48 0.71 -13.50 15 17 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 18 H 0.05 1.75 8.14 -2.39 -0.02 1.73 15 19 H 0.09 2.24 8.14 -2.38 -0.02 2.22 15 20 H 0.04 1.40 8.14 -2.38 -0.02 1.38 15 21 H 0.08 3.14 7.98 -2.39 -0.02 3.12 15 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 24 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 25 H 0.42 16.24 6.56 -92.71 -0.61 15.64 15 26 H 0.41 12.21 8.95 -92.71 -0.83 11.38 15 27 H 0.28 14.13 8.30 -92.71 -0.77 13.36 15 Total: -1.00 -62.23 232.19 3.53 -58.70 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.36 Total: 23.72 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 2.73 Total: -30.27 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -1.32 Total: -99.01 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.79 Total: 2.93 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.68 Total: 43.93 kcal Total: -62.23 3.53 -58.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260264182.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.738 kcal (2) G-P(sol) polarization free energy of solvation -62.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds