Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46719 * 2 1 4 4 C 1.50707 * 109.46861 * 119.99790 * 2 1 3 5 5 H 1.07996 * 119.99679 * 120.00016 * 4 2 1 6 6 C 1.37870 * 120.00156 * 299.99770 * 4 2 1 7 7 N 1.31519 * 119.99698 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00062 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47025 * 90.00155 * 8 6 4 10 10 H 1.48498 * 109.47071 * 209.99873 * 8 6 4 11 11 H 1.48493 * 109.47021 * 330.00230 * 8 6 4 12 12 C 1.50699 * 109.46964 * 239.99466 * 2 1 3 13 13 C 1.39815 * 125.86177 * 325.00178 * 12 2 1 14 14 C 1.35947 * 107.83629 * 179.75836 * 13 12 2 15 15 O 1.35760 * 126.19730 * 180.26812 * 14 13 12 16 16 N 1.35136 * 107.61298 * 0.24144 * 14 13 12 17 17 C 1.46498 * 126.03819 * 179.97438 * 16 14 13 18 18 N 1.30834 * 125.85429 * 145.19345 * 12 2 1 19 19 H 1.08997 * 109.47009 * 300.00336 * 1 2 3 20 20 H 1.08994 * 109.47068 * 60.00395 * 1 2 3 21 21 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 22 22 H 0.97006 * 119.99472 * 180.02562 * 7 6 4 23 23 H 1.08002 * 126.08516 * 0.02610 * 13 12 2 24 24 H 0.96697 * 114.00680 * 89.96881 * 15 14 13 25 25 H 1.08999 * 109.47442 * 89.99929 * 17 16 14 26 26 H 1.09000 * 109.46897 * 210.00022 * 17 16 14 27 27 H 1.09004 * 109.47243 * 329.99929 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5439 4.4119 10 1 1.3444 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 6 2.0323 -0.7105 -1.2304 13 6 1.4302 -1.8142 -1.8421 14 6 2.1830 -2.1540 -2.9219 15 8 1.9334 -3.1716 -3.7851 16 7 3.2246 -1.2950 -2.9808 17 6 4.2876 -1.2972 -3.9889 18 7 3.1087 -0.4025 -1.9075 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.7088 1.1614 3.4844 23 1 0.5254 -2.3064 -1.5173 24 1 1.3829 -2.9213 -4.5397 25 1 3.9953 -0.6640 -4.8265 26 1 5.2076 -0.9141 -3.5475 27 1 4.4508 -2.3152 -4.3427 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260355054.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = 31.967819 kcal Electronic energy + Delta-G solvation = -12220.537568 eV Core-core repulsion = 9980.626874 eV Total energy + Delta-G solvation = -2239.910694 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.66091 -36.96307 -34.53578 -32.40706 -30.11169 -28.55031 -25.75079 -25.07675 -21.97092 -20.73207 -18.93250 -17.57665 -16.33874 -15.77915 -14.82408 -14.54536 -13.95858 -13.73216 -12.85463 -12.66430 -12.44740 -11.92393 -11.43489 -11.17663 -10.87613 -10.76460 -10.34410 -10.15685 -9.86113 -9.48913 -9.10741 -8.32068 -8.21004 -7.84711 -5.96393 -4.01902 2.26592 2.91780 3.35684 3.41205 3.45136 3.63560 4.36245 4.51040 4.97286 5.34346 5.34883 5.57690 5.77292 6.20214 6.39361 6.65181 6.91826 6.93344 7.05634 7.20476 7.53070 7.72266 7.87439 7.97940 8.12829 8.41071 8.57484 8.98989 9.61653 11.09847 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.050768 B = 0.009553 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.398058 B = 2930.457605 C = 3029.445171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.110 3.890 3 H 0.044 0.956 4 C -0.501 4.501 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.135 3.865 13 C -0.263 4.263 14 C 0.231 3.769 15 O -0.472 6.472 16 N -0.402 5.402 17 C 0.106 3.894 18 N -0.295 5.295 19 H 0.089 0.911 20 H 0.010 0.990 21 H 0.032 0.968 22 H 0.261 0.739 23 H 0.148 0.852 24 H 0.388 0.612 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -4.129 -11.146 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.090 3.910 3 H 0.062 0.938 4 C -0.540 4.540 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.031 4.031 13 C -0.293 4.293 14 C 0.063 3.937 15 O -0.274 6.274 16 N -0.194 5.194 17 C -0.036 4.036 18 N -0.119 5.119 19 H 0.107 0.893 20 H 0.029 0.971 21 H 0.051 0.949 22 H 0.071 0.929 23 H 0.166 0.834 24 H 0.243 0.757 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.530 -3.671 -10.893 11.770 hybrid contribution -0.523 -0.926 0.330 1.113 sum 2.007 -4.596 -10.563 11.693 Atomic orbital electron populations 1.21759 0.97033 0.99596 1.00461 1.17405 0.92725 0.95273 0.85622 0.93850 1.20961 1.31138 1.12354 0.89581 0.92583 1.24905 0.95063 0.95036 0.98842 1.69887 1.36739 1.22907 1.23458 0.86522 0.78556 0.80087 0.82442 1.20685 1.21172 1.19907 1.23162 0.90369 0.93774 0.95788 1.21176 1.04864 1.03450 0.99827 1.18780 0.91643 0.88784 0.94461 1.84852 1.73235 1.30842 1.38493 1.48998 1.21214 1.24946 1.24232 1.21614 0.89964 1.02585 0.89449 1.77563 1.21821 1.12821 0.99682 0.89280 0.97075 0.94913 0.92906 0.83449 0.75715 0.91769 0.89652 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.56 37.16 0.32 -2.84 15 2 C 0.11 2.90 2.76 -92.92 -0.26 2.64 15 3 H 0.04 1.24 8.14 -51.93 -0.42 0.81 15 4 C -0.50 -14.25 8.55 -34.44 -0.29 -14.55 15 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 15 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -25.48 11.32 55.43 0.63 -24.85 15 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 15 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 12 C 0.13 3.23 6.06 -82.43 -0.50 2.73 15 13 C -0.26 -5.54 10.00 -39.81 -0.40 -5.94 15 14 C 0.23 4.26 7.98 -16.92 -0.14 4.12 15 15 O -0.47 -6.73 13.57 -18.99 -0.26 -6.99 15 16 N -0.40 -7.55 4.02 -68.28 -0.27 -7.82 15 17 C 0.11 1.37 11.42 59.85 0.68 2.05 15 18 N -0.29 -6.81 12.57 33.66 0.42 -6.38 15 19 H 0.09 2.34 6.07 -51.93 -0.32 2.02 15 20 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 15 21 H 0.03 0.75 7.30 -51.93 -0.38 0.37 15 22 H 0.26 7.08 8.31 -40.82 -0.34 6.75 15 23 H 0.15 2.92 7.42 -52.49 -0.39 2.53 15 24 H 0.39 3.35 9.06 45.56 0.41 3.76 15 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.08 1.06 8.14 -51.93 -0.42 0.64 15 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 LS Contribution 239.57 15.07 3.61 3.61 Total: -1.00 -32.33 239.57 -3.89 -36.23 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -2.33 Total: -0.36 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.68 Total: -10.11 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.78 Total: -39.06 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.26 Total: -6.99 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.33 -3.89 -36.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355054.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.197 kcal (2) G-P(sol) polarization free energy of solvation -32.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds