Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46719 * 2 1 4 4 C 1.50707 * 109.46861 * 119.99790 * 2 1 3 5 5 H 1.07996 * 119.99679 * 120.00016 * 4 2 1 6 6 C 1.37870 * 120.00156 * 299.99770 * 4 2 1 7 7 N 1.31519 * 119.99698 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00062 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47025 * 90.00155 * 8 6 4 10 10 H 1.48498 * 109.47071 * 209.99873 * 8 6 4 11 11 H 1.48493 * 109.47021 * 330.00230 * 8 6 4 12 12 C 1.50699 * 109.46964 * 239.99466 * 2 1 3 13 13 C 1.39815 * 125.86177 * 325.00178 * 12 2 1 14 14 C 1.35947 * 107.83629 * 179.75836 * 13 12 2 15 15 O 1.35760 * 126.19730 * 180.26812 * 14 13 12 16 16 N 1.35136 * 107.61298 * 0.24144 * 14 13 12 17 17 C 1.46498 * 126.03819 * 179.97438 * 16 14 13 18 18 N 1.30834 * 125.85429 * 145.19345 * 12 2 1 19 19 H 1.08997 * 109.47009 * 300.00336 * 1 2 3 20 20 H 1.08994 * 109.47068 * 60.00395 * 1 2 3 21 21 H 1.09003 * 109.47054 * 180.02562 * 1 2 3 22 22 H 0.97006 * 119.99472 * 180.02562 * 7 6 4 23 23 H 1.08002 * 126.08516 * 0.02610 * 13 12 2 24 24 H 0.96697 * 114.00680 * 89.96881 * 15 14 13 25 25 H 1.08999 * 109.47442 * 89.99929 * 17 16 14 26 26 H 1.09000 * 109.46897 * 210.00022 * 17 16 14 27 27 H 1.09004 * 109.47243 * 329.99929 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6033 8 14 2.3225 -1.1195 4.0080 9 1 3.6305 -0.5439 4.4119 10 1 1.3444 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 6 2.0323 -0.7105 -1.2304 13 6 1.4302 -1.8142 -1.8421 14 6 2.1830 -2.1540 -2.9219 15 8 1.9334 -3.1716 -3.7851 16 7 3.2246 -1.2950 -2.9808 17 6 4.2876 -1.2972 -3.9889 18 7 3.1087 -0.4025 -1.9075 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 0.7088 1.1614 3.4844 23 1 0.5254 -2.3064 -1.5173 24 1 1.3829 -2.9213 -4.5397 25 1 3.9953 -0.6640 -4.8265 26 1 5.2076 -0.9141 -3.5475 27 1 4.4508 -2.3152 -4.3427 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260355054.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = 7.190245 kcal Electronic energy + Delta-G solvation = -12221.612004 eV Core-core repulsion = 9980.626874 eV Total energy + Delta-G solvation = -2240.985130 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.19098 -38.26351 -36.41193 -34.09867 -31.96176 -30.10191 -27.19938 -27.12808 -23.82155 -22.12593 -20.62287 -18.99881 -18.33880 -17.30369 -16.56701 -16.19252 -15.34038 -15.11781 -14.77200 -14.39257 -13.61734 -13.36517 -13.30824 -12.82598 -12.69009 -12.62412 -12.24070 -12.08203 -11.80615 -11.22513 -11.07733 -10.44635 -9.86777 -9.38691 -8.09464 -6.23529 0.82079 1.43536 1.44059 1.53601 1.56785 1.91934 2.47645 3.12582 3.17681 3.72828 4.34820 4.42070 4.62896 4.66429 4.78468 4.96729 5.00006 5.16324 5.25238 5.56707 5.75513 5.83712 5.88219 6.07518 6.31861 6.76336 6.80986 6.91774 7.43468 8.95743 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.050768 B = 0.009553 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.398058 B = 2930.457605 C = 3029.445171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.110 3.890 3 H 0.006 0.994 4 C -0.523 4.523 5 H 0.042 0.958 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.959 3.041 9 H -0.277 1.277 10 H -0.275 1.275 11 H -0.272 1.272 12 C 0.109 3.891 13 C -0.293 4.293 14 C 0.262 3.738 15 O -0.462 6.462 16 N -0.394 5.394 17 C 0.094 3.906 18 N -0.330 5.330 19 H 0.065 0.935 20 H 0.029 0.971 21 H 0.040 0.960 22 H 0.265 0.735 23 H 0.152 0.848 24 H 0.419 0.581 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -5.536 -12.397 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.089 3.911 3 H 0.024 0.976 4 C -0.562 4.562 5 H 0.060 0.940 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.200 1.200 11 H -0.197 1.197 12 C -0.055 4.055 13 C -0.323 4.323 14 C 0.091 3.909 15 O -0.269 6.269 16 N -0.187 5.187 17 C -0.046 4.046 18 N -0.156 5.156 19 H 0.084 0.916 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.170 0.830 24 H 0.279 0.721 25 H 0.111 0.889 26 H 0.106 0.894 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.904 -5.071 -12.180 13.510 hybrid contribution -0.579 -0.525 0.540 0.950 sum 2.325 -5.597 -11.640 13.124 Atomic orbital electron populations 1.21557 0.95810 0.99920 1.00132 1.17201 0.93775 0.93332 0.86745 0.97592 1.21149 1.31594 1.12328 0.91123 0.94013 1.25660 0.95093 0.95698 1.01557 1.69999 1.37168 1.23764 1.24303 0.85545 0.78190 0.78903 0.78947 1.20315 1.19980 1.19652 1.22779 0.91661 0.95264 0.95807 1.21209 1.06117 1.03679 1.01294 1.18586 0.90360 0.87999 0.93946 1.84805 1.73897 1.29064 1.39113 1.49331 1.22123 1.23618 1.23609 1.22102 0.88591 1.05120 0.88800 1.77420 1.21917 1.14891 1.01398 0.91598 0.95209 0.94120 0.92580 0.83016 0.72096 0.88899 0.89438 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.56 71.98 0.62 -5.12 15 2 C 0.11 5.99 2.76 -12.28 -0.03 5.95 15 3 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 4 C -0.52 -30.55 8.55 25.60 0.22 -30.33 15 5 H 0.04 2.49 7.74 -2.91 -0.02 2.47 15 6 C 0.02 1.08 5.30 84.65 0.45 1.53 15 7 N -0.91 -53.16 11.32 21.45 0.24 -52.92 15 8 Si 0.96 44.78 29.54 68.60 2.03 46.81 15 9 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 12 C 0.11 5.31 6.06 43.09 0.26 5.57 15 13 C -0.29 -12.13 10.00 22.12 0.22 -11.91 15 14 C 0.26 8.98 7.98 83.65 0.67 9.64 15 15 O -0.46 -11.26 13.57 -90.86 -1.23 -12.49 15 16 N -0.39 -13.98 4.02 -481.26 -1.93 -15.91 15 17 C 0.09 2.10 11.42 127.77 1.46 3.56 15 18 N -0.33 -15.29 12.57 -47.42 -0.60 -15.88 15 19 H 0.07 3.55 6.07 -2.39 -0.01 3.53 15 20 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.04 1.89 7.30 -2.39 -0.02 1.87 15 22 H 0.26 14.50 8.31 -92.70 -0.77 13.73 15 23 H 0.15 5.93 7.42 -2.91 -0.02 5.91 15 24 H 0.42 5.17 9.06 -74.06 -0.67 4.49 15 25 H 0.09 1.60 8.14 -2.39 -0.02 1.59 15 26 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 27 H 0.11 1.84 8.14 -2.38 -0.02 1.82 15 Total: -1.00 -70.76 239.57 2.87 -67.89 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: 0.51 Total: 3.62 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 3.86 Total: -21.10 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -2.29 Total: -84.71 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -1.23 Total: -12.49 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.76 2.87 -67.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355054.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.076 kcal (2) G-P(sol) polarization free energy of solvation -70.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds