Wall clock time and date at job start Mon Mar 30 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34331 * 126.44432 * 2 1 4 4 N 1.34474 * 107.67029 * 180.25867 * 3 2 1 5 5 C 1.30258 * 108.70072 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.61867 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.47045 * 194.97935 * 6 5 4 8 8 N 1.46895 * 109.47215 * 314.97332 * 6 5 4 9 9 C 1.52996 * 109.47362 * 74.97601 * 6 5 4 10 10 C 1.50695 * 109.47158 * 174.99655 * 9 6 5 11 11 H 1.07996 * 120.00216 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99854 * 179.97438 * 10 9 6 13 13 N 1.31517 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99961 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47033 * 60.00350 * 14 12 10 16 16 H 1.48503 * 109.47204 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47047 * 300.00267 * 14 12 10 18 18 O 1.33964 * 108.76191 * 0.02562 * 5 4 3 19 19 H 1.08997 * 109.47627 * 269.69038 * 1 2 3 20 20 H 1.09005 * 109.46869 * 29.69079 * 1 2 3 21 21 H 1.08998 * 109.47013 * 149.68470 * 1 2 3 22 22 H 1.07996 * 126.16271 * 0.24298 * 3 2 1 23 23 H 1.00907 * 111.00377 * 60.00018 * 8 6 5 24 24 H 1.00901 * 111.00164 * 183.95575 * 8 6 5 25 25 H 1.08996 * 109.47152 * 295.00284 * 9 6 5 26 26 H 1.09006 * 109.46781 * 54.99796 * 9 6 5 27 27 H 0.97004 * 120.00047 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 -0.0058 5 6 3.5765 -0.6547 -0.0098 6 6 4.8004 -1.5340 -0.0163 7 1 4.5154 -2.5514 -0.2842 8 7 5.7662 -1.0216 -0.9974 9 6 5.4370 -1.5322 1.3749 10 6 6.5873 -2.5053 1.4022 11 1 6.8394 -3.0684 0.5159 12 6 7.3186 -2.6760 2.5586 13 7 7.0119 -1.9899 3.6379 14 14 8.7449 -3.8818 2.5922 15 1 9.7576 -3.4788 1.5836 16 1 9.3628 -3.8801 3.9426 17 1 8.2479 -5.2453 2.2774 18 8 2.3075 -1.0840 -0.0073 19 1 -0.3634 -0.0056 1.0276 20 1 -0.3633 0.8928 -0.5091 21 1 -0.3633 -0.8871 -0.5187 22 1 1.9821 2.1112 0.0037 23 1 6.0462 -0.0790 -0.7710 24 1 6.5680 -1.6301 -1.0672 25 1 5.8020 -0.5315 1.6062 26 1 4.6934 -1.8277 2.1151 27 1 7.5262 -2.1102 4.4515 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260395828.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:04 Heat of formation + Delta-G solvation = 6.604806 kcal Electronic energy + Delta-G solvation = -12059.826104 eV Core-core repulsion = 9818.815587 eV Total energy + Delta-G solvation = -2241.010517 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.81763 -35.80846 -34.10500 -32.59312 -31.76611 -28.17032 -26.86052 -24.34550 -22.28733 -21.18350 -19.82622 -17.16890 -16.28510 -16.00848 -14.78001 -14.62807 -14.06906 -13.82163 -13.18336 -12.97921 -12.57383 -12.38743 -12.15463 -11.79038 -11.02963 -10.87792 -10.74943 -10.46225 -10.02509 -9.95255 -9.32843 -8.51798 -8.31538 -7.81187 -6.12204 -4.18309 1.90490 3.07998 3.21800 3.27412 3.32499 3.34613 4.34940 4.65086 5.03349 5.21906 5.25054 5.43099 5.44283 5.64427 5.69638 6.07393 6.25603 6.43782 6.50523 6.78940 7.35193 7.51881 7.80311 7.86788 8.14251 8.24112 8.30727 8.86969 9.47010 10.98635 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066796 B = 0.008040 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.087878 B = 3481.903539 C = 3602.779020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.077 4.077 3 C -0.042 4.042 4 N -0.486 5.486 5 C 0.230 3.770 6 C 0.184 3.816 7 H 0.094 0.906 8 N -0.833 5.833 9 C 0.003 3.997 10 C -0.530 4.530 11 H 0.060 0.940 12 C 0.062 3.938 13 N -0.889 5.889 14 Si 0.898 3.102 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.276 1.276 18 O -0.204 6.204 19 H 0.078 0.922 20 H 0.086 0.914 21 H 0.073 0.927 22 H 0.176 0.824 23 H 0.345 0.655 24 H 0.356 0.644 25 H 0.029 0.971 26 H 0.021 0.979 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.102 2.743 -6.104 11.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.130 4.130 3 C -0.180 4.180 4 N -0.214 5.214 5 C 0.023 3.977 6 C 0.071 3.929 7 H 0.111 0.889 8 N -0.365 5.365 9 C -0.036 4.036 10 C -0.568 4.568 11 H 0.078 0.922 12 C -0.141 4.141 13 N -0.527 5.527 14 Si 0.725 3.275 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.201 1.201 18 O -0.091 6.091 19 H 0.097 0.903 20 H 0.105 0.895 21 H 0.092 0.908 22 H 0.193 0.807 23 H 0.157 0.843 24 H 0.171 0.829 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.104 2.994 -6.455 11.555 hybrid contribution 0.722 -0.822 1.080 1.538 sum -8.382 2.172 -5.375 10.191 Atomic orbital electron populations 1.20142 0.84647 1.03691 1.03267 1.23282 0.94809 0.85107 1.09840 1.23014 0.88399 0.99871 1.06762 1.70372 1.22248 1.09570 1.19215 1.26836 0.83976 0.90332 0.96586 1.20012 0.83728 0.93338 0.95775 0.88850 1.58931 1.19333 1.08061 1.50173 1.19818 0.95884 0.98582 0.89338 1.21013 1.14352 1.23811 0.97624 0.92167 1.25011 0.97594 0.95964 0.95499 1.69971 1.40238 1.40710 1.01731 0.86566 0.82239 0.81447 0.77221 1.20041 1.21254 1.20101 1.84378 1.18156 1.36516 1.70092 0.90332 0.89534 0.90784 0.80695 0.84314 0.82877 0.95256 0.96047 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.43 36.00 0.38 -0.25 15 2 C -0.08 -1.25 7.39 -35.69 -0.26 -1.51 15 3 C -0.04 -0.72 11.80 -17.77 -0.21 -0.93 15 4 N -0.49 -10.13 11.12 -11.10 -0.12 -10.25 15 5 C 0.23 4.90 7.18 -12.95 -0.09 4.80 15 6 C 0.18 3.99 3.30 -68.87 -0.23 3.76 15 7 H 0.09 1.96 8.14 -51.92 -0.42 1.54 15 8 N -0.83 -16.39 9.18 -5.66 -0.05 -16.45 15 9 C 0.00 0.08 4.60 -27.89 -0.13 -0.05 15 10 C -0.53 -14.23 8.55 -34.44 -0.29 -14.53 15 11 H 0.06 1.52 7.14 -52.49 -0.37 1.15 15 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 13 N -0.89 -26.28 13.29 55.43 0.74 -25.54 15 14 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 15 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 17 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 18 O -0.20 -4.02 10.78 5.36 0.06 -3.97 15 19 H 0.08 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.09 0.68 8.14 -51.93 -0.42 0.25 15 21 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.18 2.31 8.06 -52.49 -0.42 1.89 15 23 H 0.34 6.87 8.85 -39.29 -0.35 6.52 15 24 H 0.36 6.73 7.90 -39.29 -0.31 6.42 15 25 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 26 H 0.02 0.60 8.14 -51.93 -0.42 0.17 15 27 H 0.26 7.37 8.31 -40.82 -0.34 7.04 15 LS Contribution 243.05 15.07 3.66 3.66 Total: -1.00 -31.01 243.05 -4.80 -35.82 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -3.13 Total: 7.84 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.94 Total: -7.09 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.56 Total: -52.25 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: 0.06 Total: -3.97 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.01 -4.80 -35.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395828.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.422 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds