Wall clock time and date at job start Mon Mar 30 2020 02:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34331 * 126.44432 * 2 1 4 4 N 1.34474 * 107.67029 * 180.25867 * 3 2 1 5 5 C 1.30258 * 108.70072 * 0.02562 * 4 3 2 6 6 C 1.50701 * 125.61867 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.47045 * 194.97935 * 6 5 4 8 8 N 1.46895 * 109.47215 * 314.97332 * 6 5 4 9 9 C 1.52996 * 109.47362 * 74.97601 * 6 5 4 10 10 C 1.50695 * 109.47158 * 174.99655 * 9 6 5 11 11 H 1.07996 * 120.00216 * 0.02562 * 10 9 6 12 12 C 1.37877 * 119.99854 * 179.97438 * 10 9 6 13 13 N 1.31517 * 120.00069 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99961 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47033 * 60.00350 * 14 12 10 16 16 H 1.48503 * 109.47204 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47047 * 300.00267 * 14 12 10 18 18 O 1.33964 * 108.76191 * 0.02562 * 5 4 3 19 19 H 1.08997 * 109.47627 * 269.69038 * 1 2 3 20 20 H 1.09005 * 109.46869 * 29.69079 * 1 2 3 21 21 H 1.08998 * 109.47013 * 149.68470 * 1 2 3 22 22 H 1.07996 * 126.16271 * 0.24298 * 3 2 1 23 23 H 1.00907 * 111.00377 * 60.00018 * 8 6 5 24 24 H 1.00901 * 111.00164 * 183.95575 * 8 6 5 25 25 H 1.08996 * 109.47152 * 295.00284 * 9 6 5 26 26 H 1.09006 * 109.46781 * 54.99796 * 9 6 5 27 27 H 0.97004 * 120.00047 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5781 0.6478 -0.0058 5 6 3.5765 -0.6547 -0.0098 6 6 4.8004 -1.5340 -0.0163 7 1 4.5154 -2.5514 -0.2842 8 7 5.7662 -1.0216 -0.9974 9 6 5.4370 -1.5322 1.3749 10 6 6.5873 -2.5053 1.4022 11 1 6.8394 -3.0684 0.5159 12 6 7.3186 -2.6760 2.5586 13 7 7.0119 -1.9899 3.6379 14 14 8.7449 -3.8818 2.5922 15 1 9.7576 -3.4788 1.5836 16 1 9.3628 -3.8801 3.9426 17 1 8.2479 -5.2453 2.2774 18 8 2.3075 -1.0840 -0.0073 19 1 -0.3634 -0.0056 1.0276 20 1 -0.3633 0.8928 -0.5091 21 1 -0.3633 -0.8871 -0.5187 22 1 1.9821 2.1112 0.0037 23 1 6.0462 -0.0790 -0.7710 24 1 6.5680 -1.6301 -1.0672 25 1 5.8020 -0.5315 1.6062 26 1 4.6934 -1.8277 2.1151 27 1 7.5262 -2.1102 4.4515 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260395828.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:03 Heat of formation + Delta-G solvation = -18.405799 kcal Electronic energy + Delta-G solvation = -12060.910645 eV Core-core repulsion = 9818.815587 eV Total energy + Delta-G solvation = -2242.095058 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.26510 -37.58207 -35.61092 -34.56066 -33.00266 -30.07890 -28.30789 -26.03670 -24.01645 -22.62178 -21.47963 -19.00528 -17.87710 -17.65204 -16.57983 -16.29732 -15.61687 -15.21428 -14.62388 -14.33316 -14.16978 -13.81808 -13.67923 -13.18875 -12.84597 -12.68882 -12.38712 -12.31188 -11.96631 -11.45551 -11.38428 -10.63738 -9.80478 -9.40241 -8.24691 -6.38769 0.49711 1.42475 1.45529 1.53065 1.70280 1.75983 2.39513 3.09297 3.22421 3.83558 3.95200 4.11725 4.22867 4.51749 4.59946 4.69948 4.72259 5.07532 5.21741 5.23757 5.33517 5.47255 5.68425 6.04891 6.14720 6.60262 6.75753 6.83456 7.32018 8.87294 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066796 B = 0.008040 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.087878 B = 3481.903539 C = 3602.779020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.064 4.064 3 C -0.065 4.065 4 N -0.505 5.505 5 C 0.194 3.806 6 C 0.197 3.803 7 H 0.099 0.901 8 N -0.819 5.819 9 C 0.016 3.984 10 C -0.540 4.540 11 H 0.077 0.923 12 C 0.003 3.997 13 N -0.933 5.933 14 Si 0.973 3.027 15 H -0.262 1.262 16 H -0.289 1.289 17 H -0.265 1.265 18 O -0.218 6.218 19 H 0.095 0.905 20 H 0.120 0.880 21 H 0.084 0.916 22 H 0.212 0.788 23 H 0.343 0.657 24 H 0.360 0.640 25 H -0.004 1.004 26 H -0.014 1.014 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 2.441 -7.131 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C -0.203 4.203 4 N -0.234 5.234 5 C -0.013 4.013 6 C 0.084 3.916 7 H 0.117 0.883 8 N -0.351 5.351 9 C -0.024 4.024 10 C -0.577 4.577 11 H 0.095 0.905 12 C -0.196 4.196 13 N -0.572 5.572 14 Si 0.797 3.203 15 H -0.186 1.186 16 H -0.214 1.214 17 H -0.190 1.190 18 O -0.105 6.105 19 H 0.113 0.887 20 H 0.138 0.862 21 H 0.103 0.897 22 H 0.228 0.772 23 H 0.155 0.845 24 H 0.176 0.824 25 H 0.015 0.985 26 H 0.005 0.995 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.829 2.684 -7.510 12.658 hybrid contribution 0.800 -0.639 1.401 1.735 sum -9.030 2.045 -6.109 11.092 Atomic orbital electron populations 1.20485 0.80241 1.05922 1.04954 1.24459 0.96970 0.83865 1.06342 1.23662 0.87153 1.01950 1.07564 1.70306 1.24680 1.09566 1.18883 1.26518 0.84494 0.90556 0.99776 1.19642 0.84466 0.94165 0.93370 0.88327 1.58939 1.19274 1.07958 1.48907 1.19618 0.95118 0.96404 0.91227 1.21438 1.14343 1.23719 0.98229 0.90484 1.26018 1.00637 0.97862 0.95036 1.70129 1.41850 1.42731 1.02533 0.85379 0.78602 0.79052 0.77276 1.18625 1.21432 1.18990 1.84366 1.17998 1.38037 1.70136 0.88667 0.86173 0.89680 0.77156 0.84489 0.82416 0.98524 0.99538 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.43 71.24 0.74 -0.28 15 2 C -0.06 -1.94 7.39 24.79 0.18 -1.76 15 3 C -0.07 -2.14 11.80 83.40 0.98 -1.15 15 4 N -0.50 -21.10 11.12 -303.83 -3.38 -24.48 15 5 C 0.19 8.34 7.18 88.34 0.63 8.97 15 6 C 0.20 8.66 3.30 44.17 0.15 8.80 15 7 H 0.10 4.17 8.14 -2.38 -0.02 4.15 15 8 N -0.82 -32.25 9.18 -171.81 -1.58 -33.83 15 9 C 0.02 0.84 4.60 29.85 0.14 0.98 15 10 C -0.54 -29.24 8.55 25.60 0.22 -29.02 15 11 H 0.08 3.83 7.14 -2.91 -0.02 3.81 15 12 C 0.00 0.17 5.46 84.65 0.46 0.63 15 13 N -0.93 -56.53 13.29 21.45 0.28 -56.24 15 14 Si 0.97 42.92 29.54 68.60 2.03 44.95 15 15 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 16 H -0.29 -12.71 7.11 99.48 0.71 -12.01 15 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 15 18 O -0.22 -8.52 10.78 -3.73 -0.04 -8.56 15 19 H 0.09 1.41 8.14 -2.39 -0.02 1.39 15 20 H 0.12 1.31 8.14 -2.38 -0.02 1.29 15 21 H 0.08 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.21 5.00 8.06 -2.91 -0.02 4.97 15 23 H 0.34 13.83 8.85 -89.69 -0.79 13.04 15 24 H 0.36 13.43 7.90 -89.69 -0.71 12.72 15 25 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 15 26 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 15 27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 Total: -1.00 -68.26 243.05 0.51 -67.75 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -0.31 Total: 23.25 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 3.51 Total: -12.83 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -4.67 Total: -114.55 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.04 Total: -8.56 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -68.26 0.51 -67.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260395828.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.348 kcal (2) G-P(sol) polarization free energy of solvation -68.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds