Wall clock time and date at job start Mon Mar 30 2020 02:37:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 N 1.40068 * 126.03619 * 2 1
4 4 C 1.30827 * 108.34148 * 180.02562 * 3 2 1
5 5 C 1.50706 * 125.85979 * 180.02562 * 4 3 2
6 6 C 1.52996 * 109.46939 * 304.98080 * 5 4 3
7 7 C 1.50706 * 109.46624 * 179.97438 * 6 5 4
8 8 H 1.07998 * 120.00627 * 0.02562 * 7 6 5
9 9 C 1.37877 * 119.99880 * 179.97438 * 7 6 5
10 10 N 1.31510 * 120.00370 * 180.02562 * 9 7 6
11 11 Si 1.86806 * 119.99909 * 359.97438 * 9 7 6
12 12 H 1.48496 * 109.46912 * 89.99961 * 11 9 7
13 13 H 1.48505 * 109.47063 * 209.99948 * 11 9 7
14 14 H 1.48498 * 109.47200 * 329.99830 * 11 9 7
15 15 C 1.39814 * 108.28383 * 359.74857 * 4 3 2
16 16 C 1.35129 * 126.03777 * 180.02562 * 2 1 3
17 17 O 1.35764 * 126.19050 * 359.96257 * 16 2 1
18 18 H 1.09005 * 109.46915 * 269.95757 * 1 2 3
19 19 H 1.08999 * 109.47327 * 29.95544 * 1 2 3
20 20 H 1.08996 * 109.47237 * 149.95292 * 1 2 3
21 21 H 1.09002 * 109.46914 * 64.97839 * 5 4 3
22 22 H 1.09001 * 109.47063 * 184.97558 * 5 4 3
23 23 H 1.08996 * 109.47538 * 299.99453 * 6 5 4
24 24 H 1.08993 * 109.47268 * 60.00292 * 6 5 4
25 25 H 0.97003 * 120.00468 * 180.02562 * 10 9 7
26 26 H 1.08004 * 126.08977 * 180.30381 * 15 4 3
27 27 H 0.96696 * 114.00165 * 90.00166 * 17 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2890 1.1327 0.0000
4 6 3.5354 0.7350 -0.0006
5 6 4.7477 1.6303 -0.0002
6 6 4.6664 2.5993 -1.1814
7 6 5.8784 3.4949 -1.1806
8 1 6.6316 3.3839 -0.4146
9 6 6.0264 4.4555 -2.1586
10 7 7.0842 5.2368 -2.1583
11 14 4.7248 4.6463 -3.4849
12 1 3.6973 5.6190 -3.0338
13 1 5.3591 5.1398 -4.7336
14 1 4.0832 3.3319 -3.7416
15 6 3.5498 -0.6630 0.0049
16 6 2.2600 -1.0927 -0.0005
17 8 1.8456 -2.3856 -0.0004
18 1 -0.3633 -0.0008 1.0277
19 1 -0.3634 0.8904 -0.5131
20 1 -0.3633 -0.8895 -0.5145
21 1 4.7820 2.1951 0.9314
22 1 5.6482 1.0226 -0.0900
23 1 4.6322 2.0345 -2.1130
24 1 3.7660 3.2069 -1.0916
25 1 7.1881 5.9129 -2.8461
26 1 4.4291 -1.2902 0.0105
27 1 1.7251 -2.7601 -0.8837
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260407687.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:37:41
Heat of formation + Delta-G solvation = 28.379771 kcal
Electronic energy + Delta-G solvation = -11886.337089 eV
Core-core repulsion = 9646.270805 eV
Total energy + Delta-G solvation = -2240.066283 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 196.095 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-41.09742 -37.30040 -34.40573 -32.75251 -30.97412 -28.87938 -27.09086 -24.72401
-21.35905 -20.97598 -19.53578 -17.82707 -16.71299 -16.25660 -15.30480 -14.29112
-14.19121 -14.09703 -13.30321 -12.80749 -12.75669 -12.48548 -12.33938 -11.58046
-11.31966 -10.99120 -10.46841 -10.02809 -9.85164 -9.55942 -9.13415 -8.70876
-8.47115 -8.30761 -5.98806 -3.96315 1.86751 2.52634 3.05481 3.37069
3.43301 3.49639 4.01375 4.51818 4.64007 5.11699 5.27740 5.36254
5.38467 5.66269 5.81871 6.14677 6.43117 6.49332 6.57441 6.75024
7.03453 7.38307 7.48435 7.58976 7.85058 8.02934 8.58519 9.06074
9.64296 11.14566
Molecular weight = 196.10amu
Principal moments of inertia in cm(-1)
A = 0.056142 B = 0.008193 C = 0.007621
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 498.616094 B = 3416.547923 C = 3673.209917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.104 3.896
2 N -0.393 5.393
3 N -0.276 5.276
4 C 0.103 3.897
5 C -0.031 4.031
6 C -0.006 4.006
7 C -0.519 4.519
8 H 0.074 0.926
9 C 0.068 3.932
10 N -0.905 5.905
11 Si 0.879 3.121
12 H -0.277 1.277
13 H -0.289 1.289
14 H -0.266 1.266
15 C -0.275 4.275
16 C 0.244 3.756
17 O -0.470 6.470
18 H 0.071 0.929
19 H 0.088 0.912
20 H 0.079 0.921
21 H 0.076 0.924
22 H 0.077 0.923
23 H 0.015 0.985
24 H 0.019 0.981
25 H 0.262 0.738
26 H 0.152 0.848
27 H 0.393 0.607
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.229 -13.189 2.018 18.099
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.037 4.037
2 N -0.185 5.185
3 N -0.101 5.101
4 C -0.062 4.062
5 C -0.070 4.070
6 C -0.044 4.044
7 C -0.557 4.557
8 H 0.092 0.908
9 C -0.133 4.133
10 N -0.544 5.544
11 Si 0.706 3.294
12 H -0.203 1.203
13 H -0.215 1.215
14 H -0.191 1.191
15 C -0.305 4.305
16 C 0.076 3.924
17 O -0.273 6.273
18 H 0.089 0.911
19 H 0.107 0.893
20 H 0.098 0.902
21 H 0.094 0.906
22 H 0.096 0.904
23 H 0.034 0.966
24 H 0.037 0.963
25 H 0.072 0.928
26 H 0.170 0.830
27 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges -13.074 -12.122 2.533 18.008
hybrid contribution -0.338 -0.737 -1.283 1.518
sum -13.412 -12.859 1.250 18.623
Atomic orbital electron populations
1.21706 0.75080 1.03875 1.03088 1.49077 1.06665 1.03957 1.58753
1.77594 1.01667 1.04561 1.26291 1.22750 0.94110 0.93502 0.95849
1.20175 0.89836 0.95438 1.01553 1.19525 0.97763 0.94199 0.92936
1.21147 1.05697 1.15895 1.13005 0.90778 1.24984 0.95346 0.95395
0.97600 1.69912 1.28224 1.21303 1.34946 0.86786 0.82175 0.78874
0.81529 1.20264 1.21488 1.19097 1.21203 0.95336 0.95443 1.18544
1.18756 0.89254 0.80224 1.04199 1.84863 1.88953 1.19742 1.33733
0.91058 0.89303 0.90218 0.90564 0.90408 0.96640 0.96262 0.92793
0.83023 0.75089
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.10 11.42 59.85 0.68 1.78 15
2 N -0.39 -6.18 4.02 -68.28 -0.27 -6.45 15
3 N -0.28 -5.41 12.53 33.66 0.42 -4.99 15
4 C 0.10 2.01 6.49 -82.43 -0.53 1.48 15
5 C -0.03 -0.64 5.73 -27.88 -0.16 -0.80 15
6 C -0.01 -0.15 4.00 -27.88 -0.11 -0.27 15
7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 15
8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 15
9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15
10 N -0.90 -28.28 13.96 55.43 0.77 -27.50 15
11 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 15
12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15
13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15
14 H -0.27 -6.65 6.54 56.52 0.37 -6.28 15
15 C -0.28 -4.57 10.75 -39.81 -0.43 -4.99 15
16 C 0.24 3.66 7.98 -16.92 -0.14 3.52 15
17 O -0.47 -5.29 13.58 -19.00 -0.26 -5.55 15
18 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15
19 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15
20 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15
21 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15
22 H 0.08 1.51 8.12 -51.93 -0.42 1.09 15
23 H 0.02 0.39 7.20 -51.93 -0.37 0.02 15
24 H 0.02 0.49 7.57 -51.93 -0.39 0.10 15
25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15
26 H 0.15 2.19 8.06 -52.48 -0.42 1.76 15
27 H 0.39 2.38 9.06 45.56 0.41 2.79 15
LS Contribution 242.67 15.07 3.66 3.66
Total: -1.00 -34.57 242.67 -3.94 -38.51
By element:
Atomic # 1 Polarization: -0.22 SS G_CDS: -2.48 Total: -2.70 kcal
Atomic # 6 Polarization: -11.65 SS G_CDS: -1.12 Total: -12.76 kcal
Atomic # 7 Polarization: -39.87 SS G_CDS: 0.92 Total: -38.95 kcal
Atomic # 8 Polarization: -5.29 SS G_CDS: -0.26 Total: -5.55 kcal
Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal
Total LS contribution 3.66 Total: 3.66 kcal
Total: -34.57 -3.94 -38.51 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260407687.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.893 kcal
(2) G-P(sol) polarization free energy of solvation -34.574 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.320 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.940 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds