Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40068 * 126.03619 * 2 1 4 4 C 1.30827 * 108.34148 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.85979 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46939 * 304.98080 * 5 4 3 7 7 C 1.50706 * 109.46624 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00627 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99880 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00370 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99909 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46912 * 89.99961 * 11 9 7 13 13 H 1.48505 * 109.47063 * 209.99948 * 11 9 7 14 14 H 1.48498 * 109.47200 * 329.99830 * 11 9 7 15 15 C 1.39814 * 108.28383 * 359.74857 * 4 3 2 16 16 C 1.35129 * 126.03777 * 180.02562 * 2 1 3 17 17 O 1.35764 * 126.19050 * 359.96257 * 16 2 1 18 18 H 1.09005 * 109.46915 * 269.95757 * 1 2 3 19 19 H 1.08999 * 109.47327 * 29.95544 * 1 2 3 20 20 H 1.08996 * 109.47237 * 149.95292 * 1 2 3 21 21 H 1.09002 * 109.46914 * 64.97839 * 5 4 3 22 22 H 1.09001 * 109.47063 * 184.97558 * 5 4 3 23 23 H 1.08996 * 109.47538 * 299.99453 * 6 5 4 24 24 H 1.08993 * 109.47268 * 60.00292 * 6 5 4 25 25 H 0.97003 * 120.00468 * 180.02562 * 10 9 7 26 26 H 1.08004 * 126.08977 * 180.30381 * 15 4 3 27 27 H 0.96696 * 114.00165 * 90.00166 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1327 0.0000 4 6 3.5354 0.7350 -0.0006 5 6 4.7477 1.6303 -0.0002 6 6 4.6664 2.5993 -1.1814 7 6 5.8784 3.4949 -1.1806 8 1 6.6316 3.3839 -0.4146 9 6 6.0264 4.4555 -2.1586 10 7 7.0842 5.2368 -2.1583 11 14 4.7248 4.6463 -3.4849 12 1 3.6973 5.6190 -3.0338 13 1 5.3591 5.1398 -4.7336 14 1 4.0832 3.3319 -3.7416 15 6 3.5498 -0.6630 0.0049 16 6 2.2600 -1.0927 -0.0005 17 8 1.8456 -2.3856 -0.0004 18 1 -0.3633 -0.0008 1.0277 19 1 -0.3634 0.8904 -0.5131 20 1 -0.3633 -0.8895 -0.5145 21 1 4.7820 2.1951 0.9314 22 1 5.6482 1.0226 -0.0900 23 1 4.6322 2.0345 -2.1130 24 1 3.7660 3.2069 -1.0916 25 1 7.1881 5.9129 -2.8461 26 1 4.4291 -1.2902 0.0105 27 1 1.7251 -2.7601 -0.8837 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260407687.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = 28.379771 kcal Electronic energy + Delta-G solvation = -11886.337089 eV Core-core repulsion = 9646.270805 eV Total energy + Delta-G solvation = -2240.066283 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.09742 -37.30040 -34.40573 -32.75251 -30.97412 -28.87938 -27.09086 -24.72401 -21.35905 -20.97598 -19.53578 -17.82707 -16.71299 -16.25660 -15.30480 -14.29112 -14.19121 -14.09703 -13.30321 -12.80749 -12.75669 -12.48548 -12.33938 -11.58046 -11.31966 -10.99120 -10.46841 -10.02809 -9.85164 -9.55942 -9.13415 -8.70876 -8.47115 -8.30761 -5.98806 -3.96315 1.86751 2.52634 3.05481 3.37069 3.43301 3.49639 4.01375 4.51818 4.64007 5.11699 5.27740 5.36254 5.38467 5.66269 5.81871 6.14677 6.43117 6.49332 6.57441 6.75024 7.03453 7.38307 7.48435 7.58976 7.85058 8.02934 8.58519 9.06074 9.64296 11.14566 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056142 B = 0.008193 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.616094 B = 3416.547923 C = 3673.209917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.393 5.393 3 N -0.276 5.276 4 C 0.103 3.897 5 C -0.031 4.031 6 C -0.006 4.006 7 C -0.519 4.519 8 H 0.074 0.926 9 C 0.068 3.932 10 N -0.905 5.905 11 Si 0.879 3.121 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.266 1.266 15 C -0.275 4.275 16 C 0.244 3.756 17 O -0.470 6.470 18 H 0.071 0.929 19 H 0.088 0.912 20 H 0.079 0.921 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.015 0.985 24 H 0.019 0.981 25 H 0.262 0.738 26 H 0.152 0.848 27 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.229 -13.189 2.018 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.185 5.185 3 N -0.101 5.101 4 C -0.062 4.062 5 C -0.070 4.070 6 C -0.044 4.044 7 C -0.557 4.557 8 H 0.092 0.908 9 C -0.133 4.133 10 N -0.544 5.544 11 Si 0.706 3.294 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.191 1.191 15 C -0.305 4.305 16 C 0.076 3.924 17 O -0.273 6.273 18 H 0.089 0.911 19 H 0.107 0.893 20 H 0.098 0.902 21 H 0.094 0.906 22 H 0.096 0.904 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.072 0.928 26 H 0.170 0.830 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -13.074 -12.122 2.533 18.008 hybrid contribution -0.338 -0.737 -1.283 1.518 sum -13.412 -12.859 1.250 18.623 Atomic orbital electron populations 1.21706 0.75080 1.03875 1.03088 1.49077 1.06665 1.03957 1.58753 1.77594 1.01667 1.04561 1.26291 1.22750 0.94110 0.93502 0.95849 1.20175 0.89836 0.95438 1.01553 1.19525 0.97763 0.94199 0.92936 1.21147 1.05697 1.15895 1.13005 0.90778 1.24984 0.95346 0.95395 0.97600 1.69912 1.28224 1.21303 1.34946 0.86786 0.82175 0.78874 0.81529 1.20264 1.21488 1.19097 1.21203 0.95336 0.95443 1.18544 1.18756 0.89254 0.80224 1.04199 1.84863 1.88953 1.19742 1.33733 0.91058 0.89303 0.90218 0.90564 0.90408 0.96640 0.96262 0.92793 0.83023 0.75089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.10 11.42 59.85 0.68 1.78 15 2 N -0.39 -6.18 4.02 -68.28 -0.27 -6.45 15 3 N -0.28 -5.41 12.53 33.66 0.42 -4.99 15 4 C 0.10 2.01 6.49 -82.43 -0.53 1.48 15 5 C -0.03 -0.64 5.73 -27.88 -0.16 -0.80 15 6 C -0.01 -0.15 4.00 -27.88 -0.11 -0.27 15 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 15 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 15 9 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 10 N -0.90 -28.28 13.96 55.43 0.77 -27.50 15 11 Si 0.88 22.45 27.47 -169.99 -4.67 17.78 15 12 H -0.28 -6.98 7.11 56.52 0.40 -6.58 15 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 15 14 H -0.27 -6.65 6.54 56.52 0.37 -6.28 15 15 C -0.28 -4.57 10.75 -39.81 -0.43 -4.99 15 16 C 0.24 3.66 7.98 -16.92 -0.14 3.52 15 17 O -0.47 -5.29 13.58 -19.00 -0.26 -5.55 15 18 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 19 H 0.09 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 1.57 8.14 -51.93 -0.42 1.15 15 22 H 0.08 1.51 8.12 -51.93 -0.42 1.09 15 23 H 0.02 0.39 7.20 -51.93 -0.37 0.02 15 24 H 0.02 0.49 7.57 -51.93 -0.39 0.10 15 25 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 26 H 0.15 2.19 8.06 -52.48 -0.42 1.76 15 27 H 0.39 2.38 9.06 45.56 0.41 2.79 15 LS Contribution 242.67 15.07 3.66 3.66 Total: -1.00 -34.57 242.67 -3.94 -38.51 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -2.48 Total: -2.70 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -1.12 Total: -12.76 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.92 Total: -38.95 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.26 Total: -5.55 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.78 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -34.57 -3.94 -38.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407687.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.893 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds