Wall clock time and date at job start Mon Mar 30 2020 02:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.40068 * 126.03619 * 2 1 4 4 C 1.30827 * 108.34148 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.85979 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.46939 * 304.98080 * 5 4 3 7 7 C 1.50706 * 109.46624 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00627 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99880 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00370 * 180.02562 * 9 7 6 11 11 Si 1.86806 * 119.99909 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.46912 * 89.99961 * 11 9 7 13 13 H 1.48505 * 109.47063 * 209.99948 * 11 9 7 14 14 H 1.48498 * 109.47200 * 329.99830 * 11 9 7 15 15 C 1.39814 * 108.28383 * 359.74857 * 4 3 2 16 16 C 1.35129 * 126.03777 * 180.02562 * 2 1 3 17 17 O 1.35764 * 126.19050 * 359.96257 * 16 2 1 18 18 H 1.09005 * 109.46915 * 269.95757 * 1 2 3 19 19 H 1.08999 * 109.47327 * 29.95544 * 1 2 3 20 20 H 1.08996 * 109.47237 * 149.95292 * 1 2 3 21 21 H 1.09002 * 109.46914 * 64.97839 * 5 4 3 22 22 H 1.09001 * 109.47063 * 184.97558 * 5 4 3 23 23 H 1.08996 * 109.47538 * 299.99453 * 6 5 4 24 24 H 1.08993 * 109.47268 * 60.00292 * 6 5 4 25 25 H 0.97003 * 120.00468 * 180.02562 * 10 9 7 26 26 H 1.08004 * 126.08977 * 180.30381 * 15 4 3 27 27 H 0.96696 * 114.00165 * 90.00166 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1327 0.0000 4 6 3.5354 0.7350 -0.0006 5 6 4.7477 1.6303 -0.0002 6 6 4.6664 2.5993 -1.1814 7 6 5.8784 3.4949 -1.1806 8 1 6.6316 3.3839 -0.4146 9 6 6.0264 4.4555 -2.1586 10 7 7.0842 5.2368 -2.1583 11 14 4.7248 4.6463 -3.4849 12 1 3.6973 5.6190 -3.0338 13 1 5.3591 5.1398 -4.7336 14 1 4.0832 3.3319 -3.7416 15 6 3.5498 -0.6630 0.0049 16 6 2.2600 -1.0927 -0.0005 17 8 1.8456 -2.3856 -0.0004 18 1 -0.3633 -0.0008 1.0277 19 1 -0.3634 0.8904 -0.5131 20 1 -0.3633 -0.8895 -0.5145 21 1 4.7820 2.1951 0.9314 22 1 5.6482 1.0226 -0.0900 23 1 4.6322 2.0345 -2.1130 24 1 3.7660 3.2069 -1.0916 25 1 7.1881 5.9129 -2.8461 26 1 4.4291 -1.2902 0.0105 27 1 1.7251 -2.7601 -0.8837 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260407687.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:41 Heat of formation + Delta-G solvation = 1.252236 kcal Electronic energy + Delta-G solvation = -11887.513427 eV Core-core repulsion = 9646.270805 eV Total energy + Delta-G solvation = -2241.242622 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.31585 -38.30870 -36.09078 -34.50909 -32.71455 -30.13802 -28.64096 -26.24639 -23.05292 -22.28842 -20.90535 -19.16655 -18.64700 -17.42068 -16.50678 -16.31782 -15.29373 -15.23752 -14.99178 -14.67130 -14.29878 -13.75878 -13.48927 -13.10051 -12.90608 -12.62153 -12.12100 -11.88715 -11.78156 -11.36534 -11.15728 -10.74479 -10.02905 -9.52049 -8.27899 -6.31073 0.71778 1.35743 1.36207 1.43759 1.49352 1.70774 2.37186 3.03019 3.07504 3.60065 4.13079 4.38070 4.38471 4.60338 4.62788 4.66353 4.81743 4.92682 5.10201 5.38783 5.53756 5.57060 5.70548 5.77749 6.29344 6.66610 6.74606 6.76086 7.33436 8.88630 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.056142 B = 0.008193 C = 0.007621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.616094 B = 3416.547923 C = 3673.209917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.389 5.389 3 N -0.315 5.315 4 C 0.083 3.917 5 C -0.023 4.023 6 C 0.004 3.996 7 C -0.530 4.530 8 H 0.042 0.958 9 C 0.009 3.991 10 N -0.948 5.948 11 Si 0.946 3.054 12 H -0.269 1.269 13 H -0.279 1.279 14 H -0.255 1.255 15 C -0.294 4.294 16 C 0.265 3.735 17 O -0.463 6.463 18 H 0.083 0.917 19 H 0.091 0.909 20 H 0.115 0.885 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.014 0.986 24 H 0.012 0.988 25 H 0.267 0.733 26 H 0.168 0.832 27 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.439 -14.976 1.291 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.182 5.182 3 N -0.142 5.142 4 C -0.082 4.082 5 C -0.062 4.062 6 C -0.034 4.034 7 C -0.568 4.568 8 H 0.061 0.939 9 C -0.188 4.188 10 N -0.589 5.589 11 Si 0.770 3.230 12 H -0.195 1.195 13 H -0.205 1.205 14 H -0.179 1.179 15 C -0.324 4.324 16 C 0.095 3.905 17 O -0.269 6.269 18 H 0.102 0.898 19 H 0.109 0.891 20 H 0.133 0.867 21 H 0.087 0.913 22 H 0.105 0.895 23 H 0.033 0.967 24 H 0.030 0.970 25 H 0.076 0.924 26 H 0.185 0.815 27 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -15.298 -13.933 1.799 20.771 hybrid contribution 0.297 -0.278 -0.985 1.066 sum -15.001 -14.212 0.814 20.680 Atomic orbital electron populations 1.22140 0.72301 1.05789 1.04546 1.49389 1.08175 1.03221 1.57419 1.77464 1.02210 1.06916 1.27648 1.22443 0.93522 0.94538 0.97654 1.19921 0.91698 0.95147 0.99447 1.19361 0.95255 0.94158 0.94673 1.21474 1.06433 1.16765 1.12136 0.93947 1.25896 0.97623 0.95043 1.00212 1.70047 1.30353 1.22258 1.36250 0.85713 0.79317 0.79368 0.78553 1.19464 1.20460 1.17944 1.21377 0.96996 0.94336 1.19700 1.18682 0.88620 0.81372 1.01839 1.84829 1.88511 1.17517 1.36071 0.89805 0.89057 0.86716 0.91270 0.89510 0.96730 0.96977 0.92432 0.81491 0.71871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 11.42 127.77 1.46 3.09 15 2 N -0.39 -11.24 4.02 -481.25 -1.93 -13.18 15 3 N -0.32 -12.04 12.53 -47.42 -0.59 -12.64 15 4 C 0.08 3.15 6.49 43.09 0.28 3.43 15 5 C -0.02 -0.97 5.73 29.85 0.17 -0.80 15 6 C 0.00 0.18 4.00 29.85 0.12 0.30 15 7 C -0.53 -31.45 9.66 25.60 0.25 -31.20 15 8 H 0.04 2.70 7.99 -2.91 -0.02 2.68 15 9 C 0.01 0.56 5.47 84.66 0.46 1.02 15 10 N -0.95 -60.40 13.96 21.45 0.30 -60.10 15 11 Si 0.95 46.25 27.47 68.60 1.88 48.13 15 12 H -0.27 -12.77 7.11 99.48 0.71 -12.07 15 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 15 14 H -0.26 -11.94 6.54 99.48 0.65 -11.29 15 15 C -0.29 -9.22 10.75 22.12 0.24 -8.98 15 16 C 0.27 7.13 7.98 83.65 0.67 7.79 15 17 O -0.46 -8.43 13.58 -90.91 -1.23 -9.67 15 18 H 0.08 1.31 8.14 -2.38 -0.02 1.29 15 19 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15 20 H 0.11 1.23 8.14 -2.39 -0.02 1.21 15 21 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 22 H 0.09 3.41 8.12 -2.39 -0.02 3.39 15 23 H 0.01 0.72 7.20 -2.39 -0.02 0.70 15 24 H 0.01 0.61 7.57 -2.39 -0.02 0.59 15 25 H 0.27 15.81 8.31 -92.71 -0.77 15.03 15 26 H 0.17 4.49 8.06 -2.91 -0.02 4.46 15 27 H 0.42 3.04 9.06 -74.06 -0.67 2.36 15 Total: -1.00 -74.84 242.67 2.51 -72.33 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: 0.44 Total: 0.46 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 3.64 Total: -25.34 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -2.23 Total: -85.91 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -1.23 Total: -9.67 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.13 kcal Total: -74.84 2.51 -72.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260407687.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.579 kcal (2) G-P(sol) polarization free energy of solvation -74.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds