Wall clock time and date at job start Mon Mar 30 2020 02:37:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46503 * 1
3 3 N 1.40068 * 126.03619 * 2 1
4 4 C 1.30827 * 108.34148 * 180.02562 * 3 2 1
5 5 C 1.50706 * 125.85979 * 180.02562 * 4 3 2
6 6 C 1.52996 * 109.46939 * 304.98080 * 5 4 3
7 7 C 1.50706 * 109.46624 * 179.97438 * 6 5 4
8 8 H 1.07998 * 120.00627 * 0.02562 * 7 6 5
9 9 C 1.37877 * 119.99880 * 179.97438 * 7 6 5
10 10 N 1.31510 * 120.00370 * 180.02562 * 9 7 6
11 11 Si 1.86806 * 119.99909 * 359.97438 * 9 7 6
12 12 H 1.48496 * 109.46912 * 89.99961 * 11 9 7
13 13 H 1.48505 * 109.47063 * 209.99948 * 11 9 7
14 14 H 1.48498 * 109.47200 * 329.99830 * 11 9 7
15 15 C 1.39814 * 108.28383 * 359.74857 * 4 3 2
16 16 C 1.35129 * 126.03777 * 180.02562 * 2 1 3
17 17 O 1.35764 * 126.19050 * 359.96257 * 16 2 1
18 18 H 1.09005 * 109.46915 * 269.95757 * 1 2 3
19 19 H 1.08999 * 109.47327 * 29.95544 * 1 2 3
20 20 H 1.08996 * 109.47237 * 149.95292 * 1 2 3
21 21 H 1.09002 * 109.46914 * 64.97839 * 5 4 3
22 22 H 1.09001 * 109.47063 * 184.97558 * 5 4 3
23 23 H 1.08996 * 109.47538 * 299.99453 * 6 5 4
24 24 H 1.08993 * 109.47268 * 60.00292 * 6 5 4
25 25 H 0.97003 * 120.00468 * 180.02562 * 10 9 7
26 26 H 1.08004 * 126.08977 * 180.30381 * 15 4 3
27 27 H 0.96696 * 114.00165 * 90.00166 * 17 16 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2890 1.1327 0.0000
4 6 3.5354 0.7350 -0.0006
5 6 4.7477 1.6303 -0.0002
6 6 4.6664 2.5993 -1.1814
7 6 5.8784 3.4949 -1.1806
8 1 6.6316 3.3839 -0.4146
9 6 6.0264 4.4555 -2.1586
10 7 7.0842 5.2368 -2.1583
11 14 4.7248 4.6463 -3.4849
12 1 3.6973 5.6190 -3.0338
13 1 5.3591 5.1398 -4.7336
14 1 4.0832 3.3319 -3.7416
15 6 3.5498 -0.6630 0.0049
16 6 2.2600 -1.0927 -0.0005
17 8 1.8456 -2.3856 -0.0004
18 1 -0.3633 -0.0008 1.0277
19 1 -0.3634 0.8904 -0.5131
20 1 -0.3633 -0.8895 -0.5145
21 1 4.7820 2.1951 0.9314
22 1 5.6482 1.0226 -0.0900
23 1 4.6322 2.0345 -2.1130
24 1 3.7660 3.2069 -1.0916
25 1 7.1881 5.9129 -2.8461
26 1 4.4291 -1.2902 0.0105
27 1 1.7251 -2.7601 -0.8837
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260407687.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:37:41
Heat of formation + Delta-G solvation = 1.252236 kcal
Electronic energy + Delta-G solvation = -11887.513427 eV
Core-core repulsion = 9646.270805 eV
Total energy + Delta-G solvation = -2241.242622 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 196.095 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-42.31585 -38.30870 -36.09078 -34.50909 -32.71455 -30.13802 -28.64096 -26.24639
-23.05292 -22.28842 -20.90535 -19.16655 -18.64700 -17.42068 -16.50678 -16.31782
-15.29373 -15.23752 -14.99178 -14.67130 -14.29878 -13.75878 -13.48927 -13.10051
-12.90608 -12.62153 -12.12100 -11.88715 -11.78156 -11.36534 -11.15728 -10.74479
-10.02905 -9.52049 -8.27899 -6.31073 0.71778 1.35743 1.36207 1.43759
1.49352 1.70774 2.37186 3.03019 3.07504 3.60065 4.13079 4.38070
4.38471 4.60338 4.62788 4.66353 4.81743 4.92682 5.10201 5.38783
5.53756 5.57060 5.70548 5.77749 6.29344 6.66610 6.74606 6.76086
7.33436 8.88630
Molecular weight = 196.10amu
Principal moments of inertia in cm(-1)
A = 0.056142 B = 0.008193 C = 0.007621
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 498.616094 B = 3416.547923 C = 3673.209917
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.092 3.908
2 N -0.389 5.389
3 N -0.315 5.315
4 C 0.083 3.917
5 C -0.023 4.023
6 C 0.004 3.996
7 C -0.530 4.530
8 H 0.042 0.958
9 C 0.009 3.991
10 N -0.948 5.948
11 Si 0.946 3.054
12 H -0.269 1.269
13 H -0.279 1.279
14 H -0.255 1.255
15 C -0.294 4.294
16 C 0.265 3.735
17 O -0.463 6.463
18 H 0.083 0.917
19 H 0.091 0.909
20 H 0.115 0.885
21 H 0.069 0.931
22 H 0.086 0.914
23 H 0.014 0.986
24 H 0.012 0.988
25 H 0.267 0.733
26 H 0.168 0.832
27 H 0.421 0.579
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.439 -14.976 1.291 20.843
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.048 4.048
2 N -0.182 5.182
3 N -0.142 5.142
4 C -0.082 4.082
5 C -0.062 4.062
6 C -0.034 4.034
7 C -0.568 4.568
8 H 0.061 0.939
9 C -0.188 4.188
10 N -0.589 5.589
11 Si 0.770 3.230
12 H -0.195 1.195
13 H -0.205 1.205
14 H -0.179 1.179
15 C -0.324 4.324
16 C 0.095 3.905
17 O -0.269 6.269
18 H 0.102 0.898
19 H 0.109 0.891
20 H 0.133 0.867
21 H 0.087 0.913
22 H 0.105 0.895
23 H 0.033 0.967
24 H 0.030 0.970
25 H 0.076 0.924
26 H 0.185 0.815
27 H 0.281 0.719
Dipole moment (debyes) X Y Z Total
from point charges -15.298 -13.933 1.799 20.771
hybrid contribution 0.297 -0.278 -0.985 1.066
sum -15.001 -14.212 0.814 20.680
Atomic orbital electron populations
1.22140 0.72301 1.05789 1.04546 1.49389 1.08175 1.03221 1.57419
1.77464 1.02210 1.06916 1.27648 1.22443 0.93522 0.94538 0.97654
1.19921 0.91698 0.95147 0.99447 1.19361 0.95255 0.94158 0.94673
1.21474 1.06433 1.16765 1.12136 0.93947 1.25896 0.97623 0.95043
1.00212 1.70047 1.30353 1.22258 1.36250 0.85713 0.79317 0.79368
0.78553 1.19464 1.20460 1.17944 1.21377 0.96996 0.94336 1.19700
1.18682 0.88620 0.81372 1.01839 1.84829 1.88511 1.17517 1.36071
0.89805 0.89057 0.86716 0.91270 0.89510 0.96730 0.96977 0.92432
0.81491 0.71871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.63 11.42 127.77 1.46 3.09 15
2 N -0.39 -11.24 4.02 -481.25 -1.93 -13.18 15
3 N -0.32 -12.04 12.53 -47.42 -0.59 -12.64 15
4 C 0.08 3.15 6.49 43.09 0.28 3.43 15
5 C -0.02 -0.97 5.73 29.85 0.17 -0.80 15
6 C 0.00 0.18 4.00 29.85 0.12 0.30 15
7 C -0.53 -31.45 9.66 25.60 0.25 -31.20 15
8 H 0.04 2.70 7.99 -2.91 -0.02 2.68 15
9 C 0.01 0.56 5.47 84.66 0.46 1.02 15
10 N -0.95 -60.40 13.96 21.45 0.30 -60.10 15
11 Si 0.95 46.25 27.47 68.60 1.88 48.13 15
12 H -0.27 -12.77 7.11 99.48 0.71 -12.07 15
13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 15
14 H -0.26 -11.94 6.54 99.48 0.65 -11.29 15
15 C -0.29 -9.22 10.75 22.12 0.24 -8.98 15
16 C 0.27 7.13 7.98 83.65 0.67 7.79 15
17 O -0.46 -8.43 13.58 -90.91 -1.23 -9.67 15
18 H 0.08 1.31 8.14 -2.38 -0.02 1.29 15
19 H 0.09 1.60 8.14 -2.39 -0.02 1.58 15
20 H 0.11 1.23 8.14 -2.39 -0.02 1.21 15
21 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15
22 H 0.09 3.41 8.12 -2.39 -0.02 3.39 15
23 H 0.01 0.72 7.20 -2.39 -0.02 0.70 15
24 H 0.01 0.61 7.57 -2.39 -0.02 0.59 15
25 H 0.27 15.81 8.31 -92.71 -0.77 15.03 15
26 H 0.17 4.49 8.06 -2.91 -0.02 4.46 15
27 H 0.42 3.04 9.06 -74.06 -0.67 2.36 15
Total: -1.00 -74.84 242.67 2.51 -72.33
By element:
Atomic # 1 Polarization: 0.02 SS G_CDS: 0.44 Total: 0.46 kcal
Atomic # 6 Polarization: -28.99 SS G_CDS: 3.64 Total: -25.34 kcal
Atomic # 7 Polarization: -83.68 SS G_CDS: -2.23 Total: -85.91 kcal
Atomic # 8 Polarization: -8.43 SS G_CDS: -1.23 Total: -9.67 kcal
Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.13 kcal
Total: -74.84 2.51 -72.33 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260407687.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.579 kcal
(2) G-P(sol) polarization free energy of solvation -74.837 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.258 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.327 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds