Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30257 * 125.62216 * 2 1 4 4 C 1.34478 * 108.70543 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66554 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.44186 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47120 * 19.99800 * 6 5 4 8 8 N 1.46906 * 109.46922 * 139.99567 * 6 5 4 9 9 C 1.52993 * 109.47029 * 259.99701 * 6 5 4 10 10 C 1.50707 * 109.46912 * 175.00056 * 9 6 5 11 11 H 1.07997 * 120.00170 * 0.02562 * 10 9 6 12 12 C 1.37881 * 119.99917 * 179.97438 * 10 9 6 13 13 N 1.31517 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99641 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47664 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47431 * 120.00168 * 14 12 10 17 17 H 1.48504 * 109.47110 * 239.99694 * 14 12 10 18 18 O 1.33972 * 125.62316 * 180.28891 * 2 1 3 19 19 H 1.09004 * 109.46758 * 90.02208 * 1 2 3 20 20 H 1.08998 * 109.47110 * 210.02612 * 1 2 3 21 21 H 1.09003 * 109.47136 * 330.02714 * 1 2 3 22 22 H 1.08003 * 126.16488 * 179.97438 * 4 3 2 23 23 H 1.00897 * 110.99706 * 59.99883 * 8 6 5 24 24 H 1.00899 * 110.99484 * 183.95841 * 8 6 5 25 25 H 1.09003 * 109.47360 * 294.99247 * 9 6 5 26 26 H 1.09000 * 109.47744 * 55.00041 * 9 6 5 27 27 H 0.96995 * 119.99304 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0004 6 6 4.7937 -1.5549 0.0003 7 1 5.6522 -0.9827 0.3518 8 7 4.5723 -2.7024 0.8905 9 6 5.0618 -2.0557 -1.4203 10 6 6.3526 -2.8332 -1.4436 11 1 6.9243 -2.9581 -0.5359 12 6 6.8031 -3.3861 -2.6237 13 7 6.1061 -3.2354 -3.7287 14 14 8.4026 -4.3504 -2.6523 15 1 8.9908 -4.3745 -1.2890 16 1 8.1347 -5.7405 -3.1010 17 1 9.3545 -3.7025 -3.5901 18 8 2.2873 -1.0890 -0.0055 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 4.4157 1.3163 0.0003 23 1 3.7811 -3.2492 0.5855 24 1 5.4018 -3.2729 0.9580 25 1 4.2431 -2.7012 -1.7386 26 1 5.1379 -1.2048 -2.0973 27 1 6.4230 -3.6247 -4.5587 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416699.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = 4.867859 kcal Electronic energy + Delta-G solvation = -12083.396318 eV Core-core repulsion = 9842.310481 eV Total energy + Delta-G solvation = -2241.085836 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.81949 -35.79967 -34.24455 -32.59567 -31.44877 -28.33371 -27.34637 -24.08937 -22.03602 -21.36403 -19.84532 -16.98226 -16.28143 -16.18332 -15.08385 -14.66272 -14.14117 -13.54980 -13.08263 -12.78821 -12.55618 -12.50876 -12.27436 -11.81533 -11.11190 -10.82516 -10.81308 -10.53071 -10.22090 -10.01760 -9.32375 -8.57950 -8.32654 -7.79076 -6.16936 -4.23011 1.97890 3.13161 3.14254 3.21625 3.30015 3.33019 4.31411 4.44583 5.11457 5.20173 5.36886 5.46157 5.48605 5.69934 5.76627 5.99222 6.29029 6.45423 6.55653 6.78863 7.30678 7.43429 7.74998 7.83305 8.07510 8.15704 8.20128 8.83117 9.43012 10.93900 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066816 B = 0.008074 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.960101 B = 3467.154566 C = 3558.714211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.158 3.842 3 N -0.483 5.483 4 C -0.065 4.065 5 C 0.007 3.993 6 C 0.170 3.830 7 H 0.101 0.899 8 N -0.840 5.840 9 C -0.003 4.003 10 C -0.529 4.529 11 H 0.060 0.940 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 O -0.196 6.196 19 H 0.086 0.914 20 H 0.083 0.917 21 H 0.094 0.906 22 H 0.179 0.821 23 H 0.336 0.664 24 H 0.352 0.648 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 3.182 6.265 9.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.049 4.049 3 N -0.214 5.214 4 C -0.204 4.204 5 C -0.047 4.047 6 C 0.059 3.941 7 H 0.119 0.881 8 N -0.369 5.369 9 C -0.042 4.042 10 C -0.567 4.567 11 H 0.079 0.921 12 C -0.141 4.141 13 N -0.527 5.527 14 Si 0.724 3.276 15 H -0.195 1.195 16 H -0.209 1.209 17 H -0.209 1.209 18 O -0.082 6.082 19 H 0.105 0.895 20 H 0.102 0.898 21 H 0.113 0.887 22 H 0.196 0.804 23 H 0.147 0.853 24 H 0.167 0.833 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.252 4.249 6.653 10.719 hybrid contribution 1.423 -1.702 -1.176 2.511 sum -5.829 2.547 5.476 8.394 Atomic orbital electron populations 1.20111 0.82041 1.04425 1.04138 1.26073 0.96307 0.79239 1.03269 1.70298 1.02244 1.30509 1.18353 1.22884 0.94727 0.93105 1.09642 1.24071 0.83260 0.95530 1.01885 1.20296 0.87621 0.90330 0.95901 0.88080 1.59184 1.10830 1.13654 1.53248 1.19873 0.97535 0.96983 0.89794 1.21105 1.06551 1.34002 0.95092 0.92140 1.25025 0.97373 0.96186 0.95549 1.69985 1.38479 1.44636 0.99599 0.86467 0.83237 0.79641 0.78264 1.19541 1.20939 1.20879 1.84369 1.16900 1.37404 1.69521 0.89504 0.89786 0.88717 0.80362 0.85310 0.83329 0.96128 0.95770 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.55 10.51 36.00 0.38 -0.17 15 2 C 0.16 2.69 8.34 -12.95 -0.11 2.58 15 3 N -0.48 -9.05 11.29 -11.10 -0.13 -9.17 15 4 C -0.07 -1.23 11.80 -17.77 -0.21 -1.44 15 5 C 0.01 0.13 6.20 -35.69 -0.22 -0.09 15 6 C 0.17 3.51 3.22 -68.86 -0.22 3.29 15 7 H 0.10 2.00 8.14 -51.93 -0.42 1.58 15 8 N -0.84 -15.90 9.18 -5.65 -0.05 -15.95 15 9 C 0.00 -0.08 4.60 -27.88 -0.13 -0.21 15 10 C -0.53 -14.02 8.55 -34.44 -0.29 -14.31 15 11 H 0.06 1.52 7.14 -52.49 -0.37 1.15 15 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 13 N -0.89 -26.03 13.29 55.43 0.74 -25.29 15 14 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 15 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 15 18 O -0.20 -3.80 10.70 5.37 0.06 -3.74 15 19 H 0.09 0.84 8.14 -51.93 -0.42 0.41 15 20 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.09 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.18 2.92 8.06 -52.48 -0.42 2.50 15 23 H 0.34 6.31 8.92 -39.29 -0.35 5.96 15 24 H 0.35 6.55 7.90 -39.29 -0.31 6.24 15 25 H 0.02 0.56 8.14 -51.93 -0.42 0.13 15 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 15 27 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 LS Contribution 243.20 15.07 3.66 3.66 Total: -1.00 -30.80 243.20 -4.77 -35.57 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.13 Total: 7.90 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -0.90 Total: -8.77 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.56 Total: -50.41 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: 0.06 Total: -3.74 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.80 -4.77 -35.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416699.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.439 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds