Wall clock time and date at job start Mon Mar 30 2020 02:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30257 * 125.62216 * 2 1 4 4 C 1.34478 * 108.70543 * 179.97438 * 3 2 1 5 5 C 1.34330 * 107.66554 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.44186 * 179.97438 * 5 4 3 7 7 H 1.09000 * 109.47120 * 19.99800 * 6 5 4 8 8 N 1.46906 * 109.46922 * 139.99567 * 6 5 4 9 9 C 1.52993 * 109.47029 * 259.99701 * 6 5 4 10 10 C 1.50707 * 109.46912 * 175.00056 * 9 6 5 11 11 H 1.07997 * 120.00170 * 0.02562 * 10 9 6 12 12 C 1.37881 * 119.99917 * 179.97438 * 10 9 6 13 13 N 1.31517 * 119.99875 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99641 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47664 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47431 * 120.00168 * 14 12 10 17 17 H 1.48504 * 109.47110 * 239.99694 * 14 12 10 18 18 O 1.33972 * 125.62316 * 180.28891 * 2 1 3 19 19 H 1.09004 * 109.46758 * 90.02208 * 1 2 3 20 20 H 1.08998 * 109.47110 * 210.02612 * 1 2 3 21 21 H 1.09003 * 109.47136 * 330.02714 * 1 2 3 22 22 H 1.08003 * 126.16488 * 179.97438 * 4 3 2 23 23 H 1.00897 * 110.99706 * 59.99883 * 8 6 5 24 24 H 1.00899 * 110.99484 * 183.95841 * 8 6 5 25 25 H 1.09003 * 109.47360 * 294.99247 * 9 6 5 26 26 H 1.09000 * 109.47744 * 55.00041 * 9 6 5 27 27 H 0.96995 * 119.99304 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 0.0006 5 6 3.5698 -0.6757 0.0004 6 6 4.7937 -1.5549 0.0003 7 1 5.6522 -0.9827 0.3518 8 7 4.5723 -2.7024 0.8905 9 6 5.0618 -2.0557 -1.4203 10 6 6.3526 -2.8332 -1.4436 11 1 6.9243 -2.9581 -0.5359 12 6 6.8031 -3.3861 -2.6237 13 7 6.1061 -3.2354 -3.7287 14 14 8.4026 -4.3504 -2.6523 15 1 8.9908 -4.3745 -1.2890 16 1 8.1347 -5.7405 -3.1010 17 1 9.3545 -3.7025 -3.5901 18 8 2.2873 -1.0890 -0.0055 19 1 -0.3633 -0.0004 -1.0277 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3633 0.8902 0.5134 22 1 4.4157 1.3163 0.0003 23 1 3.7811 -3.2492 0.5855 24 1 5.4018 -3.2729 0.9580 25 1 4.2431 -2.7012 -1.7386 26 1 5.1379 -1.2048 -2.0973 27 1 6.4230 -3.6247 -4.5587 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416699.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:46 Heat of formation + Delta-G solvation = -19.644923 kcal Electronic energy + Delta-G solvation = -12084.459272 eV Core-core repulsion = 9842.310481 eV Total energy + Delta-G solvation = -2242.148790 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.25078 -37.52571 -35.68857 -34.58777 -32.66827 -30.10312 -28.85764 -25.88438 -23.61493 -22.88875 -21.41252 -18.88238 -17.75758 -17.67184 -16.74340 -16.58448 -15.66078 -14.77281 -14.65049 -14.37784 -14.17363 -13.82917 -13.65528 -13.22841 -12.94095 -12.62023 -12.43336 -12.23836 -12.01005 -11.64224 -11.29507 -10.67517 -9.85482 -9.37966 -8.26518 -6.39985 0.54329 1.40050 1.41413 1.53989 1.70816 1.79191 2.37461 3.07726 3.21751 3.64835 4.02225 4.15840 4.30272 4.56752 4.65892 4.70865 4.72742 5.01722 5.04247 5.26950 5.41609 5.46544 5.67678 6.04922 6.17136 6.56870 6.75245 6.76885 7.31187 8.85556 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066816 B = 0.008074 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.960101 B = 3467.154566 C = 3558.714211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C 0.168 3.832 3 N -0.508 5.508 4 C -0.063 4.063 5 C -0.026 4.026 6 C 0.185 3.815 7 H 0.110 0.890 8 N -0.828 5.828 9 C 0.007 3.993 10 C -0.537 4.537 11 H 0.075 0.925 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.970 3.030 15 H -0.255 1.255 16 H -0.282 1.282 17 H -0.282 1.282 18 O -0.211 6.211 19 H 0.104 0.896 20 H 0.105 0.895 21 H 0.115 0.885 22 H 0.197 0.803 23 H 0.337 0.663 24 H 0.355 0.645 25 H -0.011 1.011 26 H -0.008 1.008 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.927 3.073 7.335 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.039 4.039 3 N -0.239 5.239 4 C -0.201 4.201 5 C -0.080 4.080 6 C 0.073 3.927 7 H 0.128 0.872 8 N -0.357 5.357 9 C -0.032 4.032 10 C -0.575 4.575 11 H 0.093 0.907 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.794 3.206 15 H -0.178 1.178 16 H -0.207 1.207 17 H -0.208 1.208 18 O -0.098 6.098 19 H 0.123 0.877 20 H 0.124 0.876 21 H 0.134 0.866 22 H 0.214 0.786 23 H 0.148 0.852 24 H 0.170 0.830 25 H 0.007 0.993 26 H 0.010 0.990 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.296 4.150 7.750 11.425 hybrid contribution 1.308 -1.615 -1.508 2.568 sum -5.988 2.534 6.242 9.013 Atomic orbital electron populations 1.20503 0.77862 1.06547 1.05888 1.27418 0.98298 0.78232 0.99934 1.70363 1.02230 1.31181 1.20099 1.23264 0.95690 0.93053 1.08066 1.23892 0.83510 0.95813 1.04765 1.19974 0.88715 0.90973 0.93072 0.87190 1.59184 1.10951 1.13383 1.52185 1.19721 0.96180 0.95101 0.92157 1.21519 1.06921 1.33423 0.95588 0.90670 1.25996 1.01067 0.97353 0.95177 1.70129 1.40639 1.46154 1.00386 0.85319 0.78594 0.77761 0.78882 1.17817 1.20750 1.20838 1.84361 1.16933 1.38524 1.69978 0.87726 0.87603 0.86611 0.78604 0.85218 0.83040 0.99285 0.98998 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.97 10.51 71.24 0.75 -0.22 15 2 C 0.17 5.47 8.34 88.34 0.74 6.21 15 3 N -0.51 -18.45 11.29 -303.82 -3.43 -21.88 15 4 C -0.06 -2.35 11.80 83.39 0.98 -1.37 15 5 C -0.03 -1.05 6.20 24.79 0.15 -0.89 15 6 C 0.18 7.61 3.22 44.17 0.14 7.75 15 7 H 0.11 4.29 8.14 -2.39 -0.02 4.27 15 8 N -0.83 -30.77 9.18 -171.80 -1.58 -32.35 15 9 C 0.01 0.37 4.60 29.85 0.14 0.50 15 10 C -0.54 -28.42 8.55 25.60 0.22 -28.20 15 11 H 0.08 3.68 7.14 -2.91 -0.02 3.66 15 12 C 0.00 0.14 5.46 84.66 0.46 0.60 15 13 N -0.93 -55.71 13.29 21.45 0.28 -55.42 15 14 Si 0.97 42.45 29.54 68.60 2.03 44.47 15 15 H -0.25 -10.38 7.11 99.48 0.71 -9.67 15 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 17 H -0.28 -12.27 7.11 99.48 0.71 -11.57 15 18 O -0.21 -8.07 10.70 -3.71 -0.04 -8.11 15 19 H 0.10 1.70 8.14 -2.38 -0.02 1.68 15 20 H 0.11 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.12 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.20 6.29 8.06 -2.91 -0.02 6.26 15 23 H 0.34 12.54 8.92 -89.70 -0.80 11.74 15 24 H 0.35 12.78 7.90 -89.69 -0.71 12.08 15 25 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 15 26 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 15 27 H 0.26 14.82 8.31 -92.71 -0.77 14.05 15 Total: -1.00 -66.25 243.20 0.53 -65.72 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: -0.32 Total: 23.20 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 3.58 Total: -15.63 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -4.72 Total: -109.66 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.04 Total: -8.11 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -66.25 0.53 -65.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416699.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.075 kcal (2) G-P(sol) polarization free energy of solvation -66.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds