Wall clock time and date at job start Mon Mar 30 2020 02:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34039 * 126.77487 * 2 1 4 4 N 1.20926 * 111.56545 * 180.28668 * 3 2 1 5 5 C 1.30175 * 111.60650 * 359.76705 * 4 3 2 6 6 C 1.35450 * 126.78026 * 179.89543 * 2 1 3 7 7 C 1.50703 * 128.00319 * 0.02562 * 6 2 1 8 8 H 1.08996 * 109.47343 * 324.70378 * 7 6 2 9 9 N 1.46905 * 109.47075 * 204.70536 * 7 6 2 10 10 C 1.53001 * 109.47072 * 84.70712 * 7 6 2 11 11 C 1.50703 * 109.47072 * 185.00098 * 10 7 6 12 12 H 1.07998 * 120.00155 * 359.97438 * 11 10 7 13 13 C 1.37871 * 119.99920 * 180.02562 * 11 10 7 14 14 N 1.31514 * 120.00383 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 120.00062 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46978 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.46836 * 120.00019 * 15 13 11 18 18 H 1.48500 * 109.47131 * 239.99797 * 15 13 11 19 19 H 1.08995 * 109.46917 * 270.10646 * 1 2 3 20 20 H 1.08994 * 109.47075 * 30.10977 * 1 2 3 21 21 H 1.09007 * 109.46969 * 150.10753 * 1 2 3 22 22 H 1.07994 * 126.80278 * 180.02562 * 5 4 3 23 23 H 1.00901 * 110.99869 * 176.04968 * 9 7 6 24 24 H 1.00896 * 110.99543 * 300.00090 * 9 7 6 25 25 H 1.08999 * 109.47045 * 304.99692 * 10 7 6 26 26 H 1.09002 * 109.47037 * 64.99916 * 10 7 6 27 27 H 0.96999 * 120.00227 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4764 0.7564 -0.0056 5 6 3.6214 -0.5372 -0.0052 6 6 2.3180 -1.0849 0.0020 7 6 1.9225 -2.5391 0.0041 8 1 1.0176 -2.6686 0.5977 9 7 3.0079 -3.3409 0.5846 10 6 1.6607 -2.9985 -1.4316 11 6 1.1473 -4.4153 -1.4200 12 1 1.0208 -4.9362 -0.4824 13 6 0.8402 -5.0470 -2.6064 14 7 0.9947 -4.4130 -3.7482 15 14 0.2045 -6.8035 -2.5920 16 1 0.1217 -7.2885 -1.1908 17 1 -1.1443 -6.8468 -3.2119 18 1 1.1312 -7.6716 -3.3619 19 1 -0.3633 0.0019 1.0276 20 1 -0.3633 0.8889 -0.5155 21 1 -0.3633 -0.8910 -0.5122 22 1 4.5528 -1.0838 -0.0090 23 1 2.7417 -4.3115 0.6566 24 1 3.8584 -3.2377 0.0517 25 1 0.9181 -2.3468 -1.8920 26 1 2.5882 -2.9527 -2.0025 27 1 0.7782 -4.8573 -4.5828 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260428907.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:08 Heat of formation + Delta-G solvation = 42.543201 kcal Electronic energy + Delta-G solvation = -12259.588852 eV Core-core repulsion = 10020.136741 eV Total energy + Delta-G solvation = -2239.452111 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.41733 -36.34797 -33.06735 -32.67154 -31.94522 -28.07792 -27.36290 -24.93694 -22.50495 -21.14450 -19.63100 -17.15750 -16.76942 -16.39049 -14.92128 -14.65572 -14.16575 -13.56571 -12.98132 -12.78778 -12.60736 -12.26728 -12.08207 -11.56758 -11.15986 -10.90755 -10.70683 -10.39304 -10.12058 -9.69424 -9.25471 -8.67964 -8.49972 -7.78350 -6.14456 -4.19800 1.94084 2.80773 3.22087 3.30697 3.33541 3.57793 4.33603 4.78548 5.08592 5.19704 5.29708 5.59806 5.69350 5.71711 5.91635 6.07611 6.27417 6.44001 6.54094 6.68198 7.37271 7.50922 7.79109 7.95270 8.13524 8.25026 8.70515 8.87248 9.46183 10.96172 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.054820 B = 0.009171 C = 0.008752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.639739 B = 3052.356369 C = 3198.357215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.049 4.049 3 O 0.085 5.915 4 N -0.381 5.381 5 C 0.004 3.996 6 C -0.165 4.165 7 C 0.163 3.837 8 H 0.080 0.920 9 N -0.840 5.840 10 C 0.000 4.000 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.284 1.284 19 H 0.081 0.919 20 H 0.076 0.924 21 H 0.097 0.903 22 H 0.184 0.816 23 H 0.349 0.651 24 H 0.330 0.670 25 H 0.020 0.980 26 H 0.017 0.983 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.261 4.957 6.190 7.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.113 4.113 3 O 0.021 5.979 4 N -0.087 5.087 5 C -0.174 4.174 6 C -0.169 4.169 7 C 0.051 3.949 8 H 0.098 0.902 9 N -0.368 5.368 10 C -0.038 4.038 11 C -0.566 4.566 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.528 5.528 15 Si 0.721 3.279 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 H 0.099 0.901 20 H 0.095 0.905 21 H 0.116 0.884 22 H 0.201 0.799 23 H 0.163 0.837 24 H 0.140 0.860 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.469 6.432 6.654 9.266 hybrid contribution -0.542 -2.293 -1.193 2.641 sum -0.073 4.138 5.461 6.852 Atomic orbital electron populations 1.20306 0.84289 1.04748 1.03427 1.24117 0.96050 0.85672 1.05428 1.84701 1.11445 1.33342 1.68443 1.73772 0.97403 1.17074 1.20418 1.24738 1.00036 0.89845 1.02811 1.21432 0.91833 0.98015 1.05632 1.19859 0.93450 0.83936 0.97622 0.90172 1.59155 1.05993 1.14961 1.56716 1.19801 0.97546 0.96408 0.90043 1.21171 1.44495 0.98217 0.92673 0.92342 1.25020 0.95441 0.98124 0.95580 1.69979 1.48123 1.37182 0.97564 0.86520 0.78601 0.84593 0.78210 1.19593 1.20934 1.21010 0.90072 0.90461 0.88417 0.79892 0.83697 0.85967 0.96129 0.96485 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.30 36.01 0.37 -0.56 15 2 C -0.05 -0.83 7.49 -35.30 -0.26 -1.10 15 3 O 0.09 1.51 11.20 17.18 0.19 1.70 15 4 N -0.38 -7.05 12.07 30.36 0.37 -6.69 15 5 C 0.00 0.07 11.51 -17.06 -0.20 -0.12 15 6 C -0.16 -3.07 5.40 -104.42 -0.56 -3.63 15 7 C 0.16 3.23 3.01 -68.86 -0.21 3.02 15 8 H 0.08 1.58 8.14 -51.93 -0.42 1.16 15 9 N -0.84 -15.22 9.00 -5.65 -0.05 -15.27 15 10 C 0.00 0.01 4.60 -27.88 -0.13 -0.12 15 11 C -0.53 -13.75 8.55 -34.44 -0.29 -14.04 15 12 H 0.06 1.46 7.14 -52.49 -0.38 1.09 15 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 14 N -0.89 -25.74 13.29 55.43 0.74 -25.00 15 15 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 15 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 19 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 20 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 21 H 0.10 1.40 7.98 -51.93 -0.41 0.99 15 22 H 0.18 2.86 7.70 -52.49 -0.40 2.46 15 23 H 0.35 6.39 7.90 -39.29 -0.31 6.08 15 24 H 0.33 5.71 8.29 -39.29 -0.33 5.39 15 25 H 0.02 0.53 8.07 -51.93 -0.42 0.11 15 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 240.69 15.07 3.63 3.63 Total: -1.00 -29.39 240.69 -4.60 -33.99 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -3.07 Total: 7.04 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.38 Total: -15.00 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 1.05 Total: -46.96 kcal Atomic # 8 Polarization: 1.51 SS G_CDS: 0.19 Total: 1.70 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -29.39 -4.60 -33.99 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428907.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.537 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds