Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34034 * 126.77508 * 2 1 4 4 N 1.20920 * 111.56547 * 180.02562 * 3 2 1 5 5 C 1.30177 * 111.60528 * 359.74873 * 4 3 2 6 6 C 1.35447 * 126.77407 * 180.02562 * 2 1 3 7 7 C 1.50701 * 128.00998 * 359.95324 * 6 2 1 8 8 H 1.08999 * 109.47083 * 40.00750 * 7 6 2 9 9 N 1.46904 * 109.47197 * 160.00679 * 7 6 2 10 10 C 1.52999 * 109.47363 * 280.00665 * 7 6 2 11 11 C 1.50702 * 109.47522 * 175.00088 * 10 7 6 12 12 H 1.08002 * 119.99446 * 359.97438 * 11 10 7 13 13 C 1.37871 * 120.00072 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 H 1.08999 * 109.46880 * 269.99519 * 1 2 3 20 20 H 1.09003 * 109.47474 * 29.99449 * 1 2 3 21 21 H 1.09003 * 109.47595 * 149.99450 * 1 2 3 22 22 H 1.08006 * 126.80577 * 180.25111 * 5 4 3 23 23 H 1.00900 * 110.99580 * 296.04323 * 9 7 6 24 24 H 1.00896 * 110.99531 * 60.00182 * 9 7 6 25 25 H 1.09000 * 109.47527 * 54.99686 * 10 7 6 26 26 H 1.09001 * 109.47054 * 294.99777 * 10 7 6 27 27 H 0.96999 * 120.00128 * 180.27192 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3094 1.0736 0.0000 4 7 3.4763 0.7564 -0.0005 5 6 3.6213 -0.5373 0.0044 6 6 2.3179 -1.0849 -0.0005 7 6 1.9224 -2.5391 -0.0002 8 1 1.0670 -2.6831 -0.6603 9 7 3.0494 -3.3533 -0.4744 10 6 1.5476 -2.9655 1.4206 11 6 1.0354 -4.3826 1.4013 12 1 0.9821 -4.9248 0.4688 13 6 0.6339 -4.9866 2.5739 14 7 0.1818 -6.2215 2.5562 15 14 0.7253 -4.0485 4.1867 16 1 2.0490 -4.2792 4.8190 17 1 0.5473 -2.5975 3.9261 18 1 -0.3476 -4.5232 5.0970 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8900 -0.5137 21 1 -0.3634 -0.8899 -0.5139 22 1 4.5528 -1.0840 0.0090 23 1 3.2744 -3.1355 -1.4336 24 1 3.8553 -3.2371 0.1215 25 1 0.7716 -2.3039 1.8058 26 1 2.4270 -2.9057 2.0618 27 1 -0.1044 -6.6450 3.3805 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260428917.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = 51.814738 kcal Electronic energy + Delta-G solvation = -12316.745012 eV Core-core repulsion = 10077.694945 eV Total energy + Delta-G solvation = -2239.050067 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.68155 -36.54719 -33.00431 -32.84742 -31.97579 -28.93828 -27.50849 -24.92617 -22.35738 -21.14022 -19.74710 -17.38727 -17.02160 -16.51469 -15.41452 -14.52360 -14.13825 -13.77830 -13.45242 -13.07561 -12.78338 -12.34432 -12.20692 -11.61742 -11.26098 -10.98680 -10.62351 -10.28143 -9.88471 -9.79083 -9.16683 -8.69183 -8.49822 -8.16818 -5.97798 -3.93491 1.69598 2.49747 3.31374 3.33905 3.39435 3.41143 4.47977 4.52232 4.82230 5.00293 5.34106 5.35026 5.47733 5.60526 5.66276 5.84354 6.03773 6.12699 6.27514 6.53448 7.04348 7.23635 7.71767 7.86580 8.02315 8.44411 8.62846 9.14270 9.64231 11.15820 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043609 B = 0.010738 C = 0.010036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.921299 B = 2606.822212 C = 2789.374117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.038 4.038 3 O 0.088 5.912 4 N -0.374 5.374 5 C -0.011 4.011 6 C -0.222 4.222 7 C 0.180 3.820 8 H 0.088 0.912 9 N -0.817 5.817 10 C 0.001 3.999 11 C -0.497 4.497 12 H 0.081 0.919 13 C 0.064 3.936 14 N -0.904 5.904 15 Si 0.872 3.128 16 H -0.279 1.279 17 H -0.269 1.269 18 H -0.288 1.288 19 H 0.088 0.912 20 H 0.077 0.923 21 H 0.096 0.904 22 H 0.183 0.817 23 H 0.326 0.674 24 H 0.334 0.666 25 H 0.020 0.980 26 H 0.010 0.990 27 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.117 11.475 -4.797 12.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.101 4.101 3 O 0.022 5.978 4 N -0.079 5.079 5 C -0.189 4.189 6 C -0.228 4.228 7 C 0.068 3.932 8 H 0.106 0.894 9 N -0.343 5.343 10 C -0.037 4.037 11 C -0.535 4.535 12 H 0.100 0.900 13 C -0.136 4.136 14 N -0.544 5.544 15 Si 0.700 3.300 16 H -0.205 1.205 17 H -0.193 1.193 18 H -0.214 1.214 19 H 0.106 0.894 20 H 0.095 0.905 21 H 0.114 0.886 22 H 0.200 0.800 23 H 0.137 0.863 24 H 0.147 0.853 25 H 0.038 0.962 26 H 0.028 0.972 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.425 11.723 -4.544 12.804 hybrid contribution 0.429 0.545 0.942 1.170 sum 2.854 12.268 -3.602 13.100 Atomic orbital electron populations 1.20338 0.83970 1.04259 1.04294 1.24303 0.96265 0.85513 1.04062 1.84716 1.11405 1.33605 1.68041 1.73789 0.97479 1.16873 1.19714 1.24779 0.99791 0.90343 1.04005 1.22924 0.92007 1.00758 1.07147 1.19965 0.93621 0.79567 1.00081 0.89392 1.58743 1.10002 1.60071 1.05485 1.19618 0.96056 0.98007 0.90002 1.21008 1.40626 0.95862 0.95979 0.90049 1.24987 0.95247 0.94722 0.98624 1.69902 1.44371 1.12615 1.27513 0.86912 0.77819 0.80749 0.84523 1.20536 1.19340 1.21436 0.89360 0.90456 0.88577 0.79961 0.86265 0.85277 0.96221 0.97170 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.30 36.01 0.37 -0.48 15 2 C -0.04 -0.58 7.49 -35.30 -0.26 -0.84 15 3 O 0.09 1.41 11.20 17.19 0.19 1.60 15 4 N -0.37 -6.25 12.07 30.36 0.37 -5.88 15 5 C -0.01 -0.17 11.47 -17.06 -0.20 -0.37 15 6 C -0.22 -3.68 5.42 -104.42 -0.57 -4.24 15 7 C 0.18 3.36 2.98 -68.86 -0.21 3.15 15 8 H 0.09 1.65 7.77 -51.93 -0.40 1.25 15 9 N -0.82 -14.21 8.71 -5.65 -0.05 -14.25 15 10 C 0.00 0.02 3.67 -27.88 -0.10 -0.08 15 11 C -0.50 -13.72 9.39 -34.44 -0.32 -14.05 15 12 H 0.08 2.46 7.99 -52.49 -0.42 2.04 15 13 C 0.06 1.85 5.47 -17.82 -0.10 1.76 15 14 N -0.90 -27.72 13.96 55.43 0.77 -26.95 15 15 Si 0.87 21.57 27.47 -169.99 -4.67 16.90 15 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 15 17 H -0.27 -6.36 6.54 56.52 0.37 -6.00 15 18 H -0.29 -7.09 7.11 56.52 0.40 -6.68 15 19 H 0.09 1.04 8.14 -51.93 -0.42 0.61 15 20 H 0.08 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.10 1.12 7.71 -51.93 -0.40 0.72 15 22 H 0.18 2.38 7.71 -52.48 -0.40 1.98 15 23 H 0.33 4.74 9.06 -39.29 -0.36 4.38 15 24 H 0.33 5.45 8.31 -39.29 -0.33 5.13 15 25 H 0.02 0.45 7.20 -51.93 -0.37 0.08 15 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 15 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 238.24 15.07 3.59 3.59 Total: -1.00 -31.54 238.24 -4.27 -35.80 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -3.09 Total: 4.34 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -1.38 Total: -15.15 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 1.09 Total: -47.08 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.19 Total: 1.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.54 -4.27 -35.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428917.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.619 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds