Wall clock time and date at job start Mon Mar 30 2020 02:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34034 * 126.77508 * 2 1 4 4 N 1.20920 * 111.56547 * 180.02562 * 3 2 1 5 5 C 1.30177 * 111.60528 * 359.74873 * 4 3 2 6 6 C 1.35447 * 126.77407 * 180.02562 * 2 1 3 7 7 C 1.50701 * 128.00998 * 359.95324 * 6 2 1 8 8 H 1.08999 * 109.47083 * 40.00750 * 7 6 2 9 9 N 1.46904 * 109.47197 * 160.00679 * 7 6 2 10 10 C 1.52999 * 109.47363 * 280.00665 * 7 6 2 11 11 C 1.50702 * 109.47522 * 175.00088 * 10 7 6 12 12 H 1.08002 * 119.99446 * 359.97438 * 11 10 7 13 13 C 1.37871 * 120.00072 * 180.02562 * 11 10 7 14 14 N 1.31516 * 119.99826 * 179.72119 * 13 11 10 15 15 Si 1.86800 * 120.00406 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 269.72576 * 15 13 11 17 17 H 1.48499 * 109.47026 * 29.72423 * 15 13 11 18 18 H 1.48496 * 109.47474 * 149.72459 * 15 13 11 19 19 H 1.08999 * 109.46880 * 269.99519 * 1 2 3 20 20 H 1.09003 * 109.47474 * 29.99449 * 1 2 3 21 21 H 1.09003 * 109.47595 * 149.99450 * 1 2 3 22 22 H 1.08006 * 126.80577 * 180.25111 * 5 4 3 23 23 H 1.00900 * 110.99580 * 296.04323 * 9 7 6 24 24 H 1.00896 * 110.99531 * 60.00182 * 9 7 6 25 25 H 1.09000 * 109.47527 * 54.99686 * 10 7 6 26 26 H 1.09001 * 109.47054 * 294.99777 * 10 7 6 27 27 H 0.96999 * 120.00128 * 180.27192 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3094 1.0736 0.0000 4 7 3.4763 0.7564 -0.0005 5 6 3.6213 -0.5373 0.0044 6 6 2.3179 -1.0849 -0.0005 7 6 1.9224 -2.5391 -0.0002 8 1 1.0670 -2.6831 -0.6603 9 7 3.0494 -3.3533 -0.4744 10 6 1.5476 -2.9655 1.4206 11 6 1.0354 -4.3826 1.4013 12 1 0.9821 -4.9248 0.4688 13 6 0.6339 -4.9866 2.5739 14 7 0.1818 -6.2215 2.5562 15 14 0.7253 -4.0485 4.1867 16 1 2.0490 -4.2792 4.8190 17 1 0.5473 -2.5975 3.9261 18 1 -0.3476 -4.5232 5.0970 19 1 -0.3633 -0.0001 1.0277 20 1 -0.3634 0.8900 -0.5137 21 1 -0.3634 -0.8899 -0.5139 22 1 4.5528 -1.0840 0.0090 23 1 3.2744 -3.1355 -1.4336 24 1 3.8553 -3.2371 0.1215 25 1 0.7716 -2.3039 1.8058 26 1 2.4270 -2.9057 2.0618 27 1 -0.1044 -6.6450 3.3805 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260428917.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:10 Heat of formation + Delta-G solvation = 28.795850 kcal Electronic energy + Delta-G solvation = -12317.743186 eV Core-core repulsion = 10077.694945 eV Total energy + Delta-G solvation = -2240.048241 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.90742 -38.01163 -34.80065 -34.08083 -33.51975 -30.77981 -28.60300 -26.55258 -23.93886 -22.48644 -21.24001 -18.92994 -18.57873 -17.95784 -16.94427 -16.17735 -15.68818 -15.23438 -14.82304 -14.55183 -14.01874 -13.90707 -13.49807 -13.21722 -12.90338 -12.40498 -12.30658 -11.95359 -11.75691 -11.29292 -11.18850 -10.69255 -9.99207 -9.53949 -8.18064 -6.18039 0.49604 1.25758 1.37604 1.38983 1.49014 2.17769 2.40919 3.15931 3.33486 3.67594 3.75861 4.11563 4.25244 4.50015 4.53693 4.71864 4.78864 4.90922 4.99502 5.18258 5.25348 5.49014 5.71851 6.34876 6.49735 6.77800 6.91578 7.24038 7.43299 8.98959 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043609 B = 0.010738 C = 0.010036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.921299 B = 2606.822212 C = 2789.374117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.025 4.025 3 O 0.084 5.916 4 N -0.392 5.392 5 C -0.005 4.005 6 C -0.244 4.244 7 C 0.194 3.806 8 H 0.082 0.918 9 N -0.831 5.831 10 C 0.005 3.995 11 C -0.494 4.494 12 H 0.042 0.958 13 C 0.002 3.998 14 N -0.954 5.954 15 Si 0.939 3.061 16 H -0.276 1.276 17 H -0.248 1.248 18 H -0.287 1.287 19 H 0.094 0.906 20 H 0.107 0.893 21 H 0.097 0.903 22 H 0.205 0.795 23 H 0.343 0.657 24 H 0.341 0.659 25 H 0.026 0.974 26 H 0.008 0.992 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.352 13.340 -4.434 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.089 4.089 3 O 0.021 5.979 4 N -0.098 5.098 5 C -0.183 4.183 6 C -0.250 4.250 7 C 0.081 3.919 8 H 0.100 0.900 9 N -0.360 5.360 10 C -0.033 4.033 11 C -0.532 4.532 12 H 0.061 0.939 13 C -0.193 4.193 14 N -0.596 5.596 15 Si 0.764 3.236 16 H -0.202 1.202 17 H -0.172 1.172 18 H -0.213 1.213 19 H 0.112 0.888 20 H 0.125 0.875 21 H 0.115 0.885 22 H 0.221 0.779 23 H 0.157 0.843 24 H 0.155 0.845 25 H 0.044 0.956 26 H 0.026 0.974 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.661 13.621 -4.204 14.502 hybrid contribution 0.350 -0.067 0.732 0.814 sum 3.011 13.554 -3.472 14.312 Atomic orbital electron populations 1.20543 0.81740 1.05857 1.05081 1.24860 0.97515 0.84972 1.01570 1.84714 1.11366 1.33727 1.68093 1.73792 0.97874 1.17286 1.20857 1.25114 1.00392 0.90122 1.02705 1.22633 0.92911 0.99761 1.09700 1.19514 0.94000 0.81046 0.97327 0.89983 1.58661 1.10122 1.60349 1.06855 1.19522 0.95742 0.95063 0.92978 1.21252 1.39736 0.97880 0.94350 0.93949 1.25868 0.95199 0.95571 1.02680 1.70062 1.46306 1.14675 1.28584 0.85829 0.77769 0.80313 0.79671 1.20200 1.17156 1.21273 0.88775 0.87464 0.88463 0.77866 0.84339 0.84540 0.95614 0.97363 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 10.30 71.24 0.73 -0.83 15 2 C -0.03 -0.70 7.49 25.04 0.19 -0.52 15 3 O 0.08 2.49 11.20 71.70 0.80 3.29 15 4 N -0.39 -12.20 12.07 -59.25 -0.72 -12.92 15 5 C -0.01 -0.15 11.47 85.71 0.98 0.83 15 6 C -0.24 -7.53 5.42 -19.74 -0.11 -7.64 15 7 C 0.19 6.95 2.98 44.17 0.13 7.09 15 8 H 0.08 3.01 7.77 -2.39 -0.02 2.99 15 9 N -0.83 -27.95 8.71 -171.79 -1.50 -29.44 15 10 C 0.00 0.21 3.67 29.85 0.11 0.32 15 11 C -0.49 -27.42 9.39 25.60 0.24 -27.18 15 12 H 0.04 2.63 7.99 -2.91 -0.02 2.61 15 13 C 0.00 0.14 5.47 84.65 0.46 0.60 15 14 N -0.95 -59.56 13.96 21.45 0.30 -59.27 15 15 Si 0.94 43.94 27.47 68.60 1.88 45.83 15 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 17 H -0.25 -10.66 6.54 99.48 0.65 -10.01 15 18 H -0.29 -13.25 7.11 99.48 0.71 -12.55 15 19 H 0.09 1.91 8.14 -2.39 -0.02 1.90 15 20 H 0.11 1.59 8.14 -2.39 -0.02 1.57 15 21 H 0.10 2.04 7.71 -2.39 -0.02 2.02 15 22 H 0.20 4.78 7.71 -2.91 -0.02 4.76 15 23 H 0.34 9.47 9.06 -89.69 -0.81 8.66 15 24 H 0.34 10.60 8.31 -89.70 -0.75 9.86 15 25 H 0.03 1.11 7.20 -2.39 -0.02 1.10 15 26 H 0.01 0.36 7.57 -2.39 -0.02 0.35 15 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 15 Total: -1.00 -67.11 238.24 3.09 -64.02 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.42 Total: 15.82 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 2.74 Total: -27.33 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -1.91 Total: -101.63 kcal Atomic # 8 Polarization: 2.49 SS G_CDS: 0.80 Total: 3.29 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -67.11 3.09 -64.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260428917.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.816 kcal (2) G-P(sol) polarization free energy of solvation -67.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds