Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.50700 * 109.47313 * 65.00349 * 3 2 1 14 14 N 1.31126 * 126.54951 * 239.71582 * 13 3 2 15 15 C 1.34494 * 105.61091 * 179.91269 * 14 13 3 16 16 C 1.50710 * 126.28599 * 180.12246 * 15 14 13 17 17 N 1.29949 * 107.43007 * 0.34890 * 15 14 13 18 18 O 1.21299 * 110.24335 * 359.77780 * 17 15 14 19 19 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 21 21 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 22 22 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 23 23 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 1.08995 * 109.47380 * 270.24003 * 16 15 14 26 26 H 1.08996 * 109.46882 * 30.24110 * 16 15 14 27 27 H 1.09007 * 109.46788 * 150.24024 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 6 1.6414 2.1163 1.2877 14 7 0.8951 3.1875 1.4101 15 6 0.8076 3.4185 2.7321 16 6 0.0516 4.5423 3.3931 17 7 1.4985 2.4976 3.3348 18 8 1.9857 1.7395 2.5228 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8295 -0.0694 -2.9455 25 1 0.7065 5.4069 3.5006 26 1 -0.8082 4.8118 2.7797 27 1 -0.2903 4.2209 4.3769 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260448511.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = 45.885917 kcal Electronic energy + Delta-G solvation = -12435.752721 eV Core-core repulsion = 10196.445561 eV Total energy + Delta-G solvation = -2239.307160 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.68929 -35.64794 -35.10662 -32.22655 -31.22427 -28.70565 -27.62238 -23.90629 -22.69773 -21.78188 -19.50595 -17.38517 -16.61978 -16.08746 -15.10167 -14.10196 -13.57275 -13.26178 -13.05167 -12.78713 -12.35595 -12.09673 -11.42259 -11.37910 -11.03414 -10.86065 -10.64552 -10.29686 -10.19669 -10.05458 -9.84013 -9.46479 -8.81896 -8.54817 -6.22721 -4.32178 2.03865 3.02848 3.23684 3.30362 3.34925 3.89294 4.26767 4.42397 4.79115 5.09923 5.60424 5.65372 5.74919 6.07533 6.12006 6.19757 6.33244 6.61466 6.73643 6.79583 6.92765 7.01561 7.43118 7.63299 7.78478 8.01922 8.67199 9.02451 9.33786 10.82942 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043067 B = 0.011468 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.998718 B = 2441.052675 C = 2826.862644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.130 3.870 4 H 0.075 0.925 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.904 3.096 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.246 3.754 14 N -0.518 5.518 15 C 0.151 3.849 16 C -0.054 4.054 17 N -0.414 5.414 18 O 0.066 5.934 19 H 0.042 0.958 20 H 0.029 0.971 21 H 0.051 0.949 22 H 0.112 0.888 23 H 0.045 0.955 24 H 0.267 0.733 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 2.253 4.782 6.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.110 3.890 4 H 0.093 0.907 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.731 3.269 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.197 1.197 13 C 0.028 3.972 14 N -0.252 5.252 15 C -0.122 4.122 16 C -0.113 4.113 17 N -0.129 5.129 18 O 0.013 5.987 19 H 0.061 0.939 20 H 0.048 0.952 21 H 0.070 0.930 22 H 0.130 0.870 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.212 2.467 5.323 7.222 hybrid contribution 1.015 -0.051 -0.189 1.033 sum -3.197 2.416 5.134 6.513 Atomic orbital electron populations 1.21865 0.98646 0.99882 1.00218 1.21702 0.92143 0.97820 1.04109 1.17885 0.97268 0.92071 0.81775 0.90739 1.20902 0.89074 1.39587 1.06743 0.91971 1.24877 0.98996 0.94368 0.95019 1.69843 1.35399 1.37329 1.09468 0.86383 0.84336 0.78766 0.77400 1.20246 1.20904 1.19746 1.30115 0.87482 0.89252 0.90302 1.71960 1.21627 1.16027 1.15624 1.25776 0.99620 0.98786 0.87976 1.19978 0.98927 0.92742 0.99626 1.74511 1.15409 1.05931 1.17016 1.85233 1.55165 1.43241 1.15111 0.93920 0.95200 0.93005 0.86954 0.93657 0.92299 0.90076 0.89665 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.73 37.16 0.36 -2.53 15 2 C -0.12 -2.68 5.23 -26.73 -0.14 -2.82 15 3 C 0.13 3.18 2.25 -92.92 -0.21 2.97 15 4 H 0.07 1.93 8.14 -51.93 -0.42 1.51 15 5 C -0.52 -13.84 8.55 -34.44 -0.29 -14.13 15 6 H 0.06 1.67 7.74 -52.49 -0.41 1.26 15 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 15 8 N -0.88 -23.31 11.28 55.43 0.63 -22.69 15 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 15 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 11 H -0.28 -6.30 7.11 56.52 0.40 -5.89 15 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 13 C 0.25 5.74 5.94 -13.06 -0.08 5.66 15 14 N -0.52 -11.56 11.55 -9.87 -0.11 -11.67 15 15 C 0.15 3.00 8.22 -156.37 -1.28 1.71 15 16 C -0.05 -0.75 10.51 36.01 0.38 -0.37 15 17 N -0.41 -8.88 12.16 30.90 0.38 -8.50 15 18 O 0.07 1.52 11.31 18.11 0.20 1.73 15 19 H 0.04 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.03 0.58 7.38 -51.93 -0.38 0.19 15 21 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.11 2.73 5.94 -51.93 -0.31 2.43 15 23 H 0.04 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.27 6.69 8.31 -40.82 -0.34 6.35 15 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 LS Contribution 239.23 15.07 3.61 3.61 Total: -1.00 -27.63 239.23 -4.88 -32.50 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -3.19 Total: -2.52 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.36 Total: -7.76 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.89 Total: -42.86 kcal Atomic # 8 Polarization: 1.52 SS G_CDS: 0.20 Total: 1.73 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -27.63 -4.88 -32.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448511.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.388 kcal (2) G-P(sol) polarization free energy of solvation -27.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds