Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.50700 * 109.47313 * 65.00349 * 3 2 1 14 14 N 1.31126 * 126.54951 * 239.71582 * 13 3 2 15 15 C 1.34494 * 105.61091 * 179.91269 * 14 13 3 16 16 C 1.50710 * 126.28599 * 180.12246 * 15 14 13 17 17 N 1.29949 * 107.43007 * 0.34890 * 15 14 13 18 18 O 1.21299 * 110.24335 * 359.77780 * 17 15 14 19 19 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 21 21 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 22 22 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 23 23 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 1.08995 * 109.47380 * 270.24003 * 16 15 14 26 26 H 1.08996 * 109.46882 * 30.24110 * 16 15 14 27 27 H 1.09007 * 109.46788 * 150.24024 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 6 1.6414 2.1163 1.2877 14 7 0.8951 3.1875 1.4101 15 6 0.8076 3.4185 2.7321 16 6 0.0516 4.5423 3.3931 17 7 1.4985 2.4976 3.3348 18 8 1.9857 1.7395 2.5228 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8295 -0.0694 -2.9455 25 1 0.7065 5.4069 3.5006 26 1 -0.8082 4.8118 2.7797 27 1 -0.2903 4.2209 4.3769 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260448511.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = 28.169254 kcal Electronic energy + Delta-G solvation = -12436.520973 eV Core-core repulsion = 10196.445561 eV Total energy + Delta-G solvation = -2240.075412 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.36844 -37.47982 -36.77081 -34.09982 -32.90099 -30.09460 -29.41232 -25.82111 -24.38205 -23.45654 -21.25235 -19.13935 -18.42096 -17.94243 -16.93189 -15.92230 -15.05520 -14.85774 -14.40401 -14.29034 -14.01593 -13.52383 -13.23124 -13.06547 -12.83164 -12.63293 -12.30092 -12.09479 -11.92057 -11.84832 -11.63375 -11.29696 -10.61863 -10.49586 -8.21435 -6.38370 0.30620 1.37030 1.45286 1.47433 1.56713 2.10785 2.40505 2.92351 3.08880 3.27542 4.22007 4.42098 4.46067 4.60527 4.62080 4.64912 4.79897 4.96453 5.08007 5.15246 5.21137 5.26250 5.50077 5.69042 5.83459 6.09266 6.63039 7.30293 7.30819 8.83625 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043067 B = 0.011468 C = 0.009903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.998718 B = 2441.052675 C = 2826.862644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.133 3.867 4 H 0.052 0.948 5 C -0.548 4.548 6 H 0.049 0.951 7 C 0.033 3.967 8 N -0.901 5.901 9 Si 0.963 3.037 10 H -0.270 1.270 11 H -0.275 1.275 12 H -0.276 1.276 13 C 0.238 3.762 14 N -0.531 5.531 15 C 0.160 3.840 16 C -0.055 4.055 17 N -0.426 5.426 18 O 0.046 5.954 19 H 0.067 0.933 20 H 0.027 0.973 21 H 0.051 0.949 22 H 0.094 0.906 23 H 0.042 0.958 24 H 0.271 0.729 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 2.714 5.359 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.112 3.888 4 H 0.070 0.930 5 C -0.587 4.587 6 H 0.068 0.932 7 C -0.168 4.168 8 N -0.538 5.538 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.200 1.200 12 H -0.201 1.201 13 C 0.020 3.980 14 N -0.267 5.267 15 C -0.113 4.113 16 C -0.113 4.113 17 N -0.144 5.144 18 O -0.002 6.002 19 H 0.086 0.914 20 H 0.046 0.954 21 H 0.070 0.930 22 H 0.112 0.888 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.494 2.905 5.894 7.961 hybrid contribution 1.056 -0.132 -0.340 1.117 sum -3.438 2.773 5.554 7.096 Atomic orbital electron populations 1.21745 0.96193 1.01528 1.00059 1.21562 0.94293 0.96325 1.02950 1.17690 0.96299 0.92949 0.81818 0.92972 1.21078 0.90234 1.40380 1.06985 0.93230 1.25552 1.02914 0.93799 0.94560 1.69926 1.36906 1.37282 1.09705 0.85484 0.79499 0.78682 0.77612 1.19509 1.20047 1.20056 1.29852 0.88122 0.89803 0.90253 1.71984 1.21710 1.15706 1.17251 1.26831 0.98308 0.99070 0.87119 1.20324 0.99203 0.91209 1.00525 1.74509 1.16482 1.06634 1.16777 1.85213 1.55909 1.44087 1.15029 0.91364 0.95387 0.93017 0.88784 0.93922 0.91911 0.88000 0.87908 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 9.73 71.98 0.70 -4.56 15 2 C -0.11 -5.11 5.23 30.59 0.16 -4.95 15 3 C 0.13 6.61 2.25 -12.29 -0.03 6.58 15 4 H 0.05 2.79 8.14 -2.38 -0.02 2.77 15 5 C -0.55 -29.44 8.55 25.60 0.22 -29.23 15 6 H 0.05 2.72 7.74 -2.91 -0.02 2.69 15 7 C 0.03 1.74 5.29 84.66 0.45 2.19 15 8 N -0.90 -47.74 11.28 21.45 0.24 -47.50 15 9 Si 0.96 41.54 29.54 68.60 2.03 43.56 15 10 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 11 H -0.28 -11.46 7.11 99.48 0.71 -10.76 15 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 13 C 0.24 11.17 5.94 88.38 0.52 11.69 15 14 N -0.53 -23.36 11.55 -303.22 -3.50 -26.87 15 15 C 0.16 6.06 8.22 138.47 1.14 7.19 15 16 C -0.05 -1.32 10.51 71.24 0.75 -0.57 15 17 N -0.43 -17.87 12.16 -60.34 -0.73 -18.60 15 18 O 0.05 2.14 11.31 74.85 0.85 2.98 15 19 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 20 H 0.03 1.05 7.38 -2.38 -0.02 1.03 15 21 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.09 4.63 5.94 -2.38 -0.01 4.62 15 23 H 0.04 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.27 13.53 8.31 -92.70 -0.77 12.76 15 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 27 H 0.10 2.02 8.14 -2.38 -0.02 2.00 15 Total: -1.00 -58.48 239.23 3.95 -54.53 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: 1.16 Total: 3.53 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 3.91 Total: -11.65 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -3.99 Total: -92.97 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.85 Total: 2.98 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -58.48 3.95 -54.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260448511.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.703 kcal (2) G-P(sol) polarization free energy of solvation -58.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds