Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34332 * 126.16754 * 2 1 4 4 O 1.34746 * 107.11169 * 179.73863 * 3 2 1 5 5 C 1.33963 * 107.76020 * 0.36352 * 4 3 2 6 6 C 1.50700 * 125.62390 * 179.89768 * 5 4 3 7 7 H 1.08991 * 109.47486 * 179.68872 * 6 5 4 8 8 C 1.50702 * 109.46870 * 59.68766 * 6 5 4 9 9 H 1.08004 * 119.99922 * 265.99436 * 8 6 5 10 10 C 1.37870 * 120.00200 * 85.99497 * 8 6 5 11 11 N 1.31524 * 119.99912 * 5.39144 * 10 8 6 12 12 Si 1.86798 * 120.00148 * 185.38693 * 10 8 6 13 13 H 1.48505 * 109.47049 * 60.00381 * 12 10 8 14 14 H 1.48507 * 109.47289 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47540 * 300.00176 * 12 10 8 16 16 C 1.53004 * 109.46930 * 299.69116 * 6 5 4 17 17 N 1.46900 * 109.46998 * 185.42197 * 16 6 5 18 18 N 1.30258 * 108.75939 * 359.63025 * 5 4 3 19 19 H 1.09005 * 109.47241 * 270.04425 * 1 2 3 20 20 H 1.08998 * 109.47576 * 30.04364 * 1 2 3 21 21 H 1.08999 * 109.47566 * 150.04498 * 1 2 3 22 22 H 1.07998 * 126.43498 * 359.97438 * 3 2 1 23 23 H 0.96996 * 119.99540 * 179.97438 * 11 10 8 24 24 H 1.09005 * 109.46730 * 305.41854 * 16 6 5 25 25 H 1.08999 * 109.47014 * 65.41794 * 16 6 5 26 26 H 1.00897 * 110.99688 * 173.98391 * 17 16 6 27 27 H 1.00905 * 110.99953 * 297.93671 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5733 0.6445 0.0059 5 6 3.5431 -0.6947 0.0013 6 6 4.7479 -1.6000 0.0030 7 1 4.4212 -2.6398 0.0038 8 6 5.5753 -1.3325 1.2338 9 1 6.4003 -0.6368 1.1892 10 6 5.2793 -1.9758 2.4168 11 7 4.3445 -2.9005 2.4464 12 14 6.2060 -1.5342 3.9774 13 1 5.9958 -0.0973 4.2882 14 1 5.7039 -2.3631 5.1027 15 1 7.6555 -1.7915 3.7821 16 6 5.5898 -1.3309 -1.2459 17 7 6.6921 -2.2996 -1.3114 18 7 2.3005 -1.0857 0.0008 19 1 -0.3634 0.0008 1.0277 20 1 -0.3634 0.8896 -0.5145 21 1 -0.3634 -0.8904 -0.5131 22 1 1.9768 2.1150 -0.0004 23 1 4.1366 -3.3533 3.2786 24 1 4.9651 -1.4307 -2.1336 25 1 5.9961 -0.3205 -1.1994 26 1 7.2045 -2.2064 -2.1756 27 1 7.3051 -2.2042 -0.5156 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260458246.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = 8.092545 kcal Electronic energy + Delta-G solvation = -12388.088119 eV Core-core repulsion = 10147.142115 eV Total energy + Delta-G solvation = -2240.946004 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.17176 -35.32193 -34.08195 -32.40897 -30.93093 -28.65352 -26.09367 -24.47021 -21.77750 -20.48064 -19.42584 -16.73258 -15.95515 -15.52373 -14.94099 -14.60356 -14.02359 -13.66290 -12.87746 -12.73124 -12.58537 -11.90124 -11.66278 -11.42916 -11.12574 -10.90406 -10.65362 -9.98721 -9.58683 -9.41805 -9.34022 -8.61873 -7.85687 -7.65088 -6.15616 -4.26245 2.52069 3.25114 3.31169 3.32850 3.78932 3.95192 4.32608 4.91177 5.32204 5.54122 5.56925 5.80569 5.98297 6.12622 6.18457 6.26043 6.42326 6.67576 6.89899 6.99269 7.44845 7.53910 7.74100 8.00709 8.07750 8.32294 8.80795 9.01190 9.40602 10.90521 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.014238 C = 0.011214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.784412 B = 1966.039487 C = 2496.195352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.023 4.023 3 C -0.132 4.132 4 O -0.206 6.206 5 C 0.262 3.738 6 C 0.121 3.879 7 H 0.104 0.896 8 C -0.526 4.526 9 H 0.060 0.940 10 C 0.074 3.926 11 N -0.860 5.860 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.272 1.272 16 C 0.079 3.921 17 N -0.839 5.839 18 N -0.508 5.508 19 H 0.066 0.934 20 H 0.063 0.937 21 H 0.069 0.931 22 H 0.195 0.805 23 H 0.267 0.733 24 H 0.048 0.952 25 H 0.016 0.984 26 H 0.323 0.677 27 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.630 5.679 -4.239 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.142 4.142 3 C -0.203 4.203 4 O -0.094 6.094 5 C 0.055 3.945 6 C 0.101 3.899 7 H 0.122 0.878 8 C -0.564 4.564 9 H 0.079 0.921 10 C -0.133 4.133 11 N -0.494 5.494 12 Si 0.723 3.277 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.198 1.198 16 C -0.053 4.053 17 N -0.369 5.369 18 N -0.236 5.236 19 H 0.084 0.916 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.212 0.788 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.034 0.966 26 H 0.133 0.867 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.482 4.359 -4.069 6.459 hybrid contribution 0.997 2.001 1.092 2.488 sum -1.486 6.361 -2.977 7.179 Atomic orbital electron populations 1.19967 0.88039 1.02154 1.01981 1.21744 0.97492 0.89445 1.05550 1.24319 0.81860 0.99986 1.14127 1.84450 1.29304 1.25645 1.69980 1.28374 0.96138 0.78144 0.91889 1.17715 0.84811 0.94012 0.93317 0.87835 1.20810 1.14932 1.26763 0.93852 0.92136 1.25093 0.94866 0.94012 0.99355 1.69976 1.29808 1.22241 1.27377 0.86601 0.80179 0.78569 0.82395 1.20210 1.21053 1.19761 1.21681 0.93354 0.92372 0.97862 1.58524 1.15673 1.56046 1.06654 1.70490 1.01085 1.30128 1.21896 0.91563 0.91773 0.91230 0.78826 0.92348 0.93390 0.96592 0.86685 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.43 36.00 0.38 -0.63 15 2 C -0.02 -0.48 7.11 -82.81 -0.59 -1.06 15 3 C -0.13 -2.63 12.08 29.35 0.35 -2.27 15 4 O -0.21 -4.88 10.77 5.39 0.06 -4.82 15 5 C 0.26 6.67 6.83 -12.95 -0.09 6.58 15 6 C 0.12 3.09 2.47 -92.92 -0.23 2.86 15 7 H 0.10 2.97 7.50 -51.93 -0.39 2.58 15 8 C -0.53 -14.06 7.45 -34.44 -0.26 -14.32 15 9 H 0.06 1.57 7.82 -52.48 -0.41 1.16 15 10 C 0.07 2.02 5.45 -17.82 -0.10 1.93 15 11 N -0.86 -24.95 12.91 55.43 0.72 -24.23 15 12 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 15 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 14 H -0.29 -6.67 7.11 56.52 0.40 -6.26 15 15 H -0.27 -6.17 7.11 56.52 0.40 -5.76 15 16 C 0.08 1.68 6.19 -3.82 -0.02 1.65 15 17 N -0.84 -16.05 9.57 -10.37 -0.10 -16.15 15 18 N -0.51 -12.90 11.29 -7.36 -0.08 -12.98 15 19 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 22 H 0.19 2.86 8.06 -52.49 -0.42 2.43 15 23 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 15 26 H 0.32 4.98 9.08 -39.29 -0.36 4.63 15 27 H 0.35 6.80 8.25 -39.29 -0.32 6.47 15 LS Contribution 243.14 15.07 3.66 3.66 Total: -1.00 -31.11 243.14 -4.47 -35.58 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -3.15 Total: 8.20 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -0.55 Total: -5.26 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.53 Total: -53.37 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: 0.06 Total: -4.82 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.11 -4.47 -35.58 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458246.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.677 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds