Wall clock time and date at job start Mon Mar 30 2020 02:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34332 * 126.16754 * 2 1 4 4 O 1.34746 * 107.11169 * 179.73863 * 3 2 1 5 5 C 1.33963 * 107.76020 * 0.36352 * 4 3 2 6 6 C 1.50700 * 125.62390 * 179.89768 * 5 4 3 7 7 H 1.08991 * 109.47486 * 179.68872 * 6 5 4 8 8 C 1.50702 * 109.46870 * 59.68766 * 6 5 4 9 9 H 1.08004 * 119.99922 * 265.99436 * 8 6 5 10 10 C 1.37870 * 120.00200 * 85.99497 * 8 6 5 11 11 N 1.31524 * 119.99912 * 5.39144 * 10 8 6 12 12 Si 1.86798 * 120.00148 * 185.38693 * 10 8 6 13 13 H 1.48505 * 109.47049 * 60.00381 * 12 10 8 14 14 H 1.48507 * 109.47289 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47540 * 300.00176 * 12 10 8 16 16 C 1.53004 * 109.46930 * 299.69116 * 6 5 4 17 17 N 1.46900 * 109.46998 * 185.42197 * 16 6 5 18 18 N 1.30258 * 108.75939 * 359.63025 * 5 4 3 19 19 H 1.09005 * 109.47241 * 270.04425 * 1 2 3 20 20 H 1.08998 * 109.47576 * 30.04364 * 1 2 3 21 21 H 1.08999 * 109.47566 * 150.04498 * 1 2 3 22 22 H 1.07998 * 126.43498 * 359.97438 * 3 2 1 23 23 H 0.96996 * 119.99540 * 179.97438 * 11 10 8 24 24 H 1.09005 * 109.46730 * 305.41854 * 16 6 5 25 25 H 1.08999 * 109.47014 * 65.41794 * 16 6 5 26 26 H 1.00897 * 110.99688 * 173.98391 * 17 16 6 27 27 H 1.00905 * 110.99953 * 297.93671 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5733 0.6445 0.0059 5 6 3.5431 -0.6947 0.0013 6 6 4.7479 -1.6000 0.0030 7 1 4.4212 -2.6398 0.0038 8 6 5.5753 -1.3325 1.2338 9 1 6.4003 -0.6368 1.1892 10 6 5.2793 -1.9758 2.4168 11 7 4.3445 -2.9005 2.4464 12 14 6.2060 -1.5342 3.9774 13 1 5.9958 -0.0973 4.2882 14 1 5.7039 -2.3631 5.1027 15 1 7.6555 -1.7915 3.7821 16 6 5.5898 -1.3309 -1.2459 17 7 6.6921 -2.2996 -1.3114 18 7 2.3005 -1.0857 0.0008 19 1 -0.3634 0.0008 1.0277 20 1 -0.3634 0.8896 -0.5145 21 1 -0.3634 -0.8904 -0.5131 22 1 1.9768 2.1150 -0.0004 23 1 4.1366 -3.3533 3.2786 24 1 4.9651 -1.4307 -2.1336 25 1 5.9961 -0.3205 -1.1994 26 1 7.2045 -2.2064 -2.1756 27 1 7.3051 -2.2042 -0.5156 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260458246.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:27 Heat of formation + Delta-G solvation = -17.467276 kcal Electronic energy + Delta-G solvation = -12389.196475 eV Core-core repulsion = 10147.142115 eV Total energy + Delta-G solvation = -2242.054361 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.92323 -37.13585 -35.79506 -34.34070 -32.60214 -30.36130 -27.67093 -26.40526 -23.53337 -22.21975 -21.23817 -18.68810 -17.69579 -17.29927 -16.65535 -16.43394 -15.77416 -15.25677 -14.65858 -14.12764 -14.00246 -13.64789 -13.39211 -13.07896 -12.89460 -12.71642 -12.46448 -11.79377 -11.55187 -11.28350 -11.15258 -10.68771 -9.45523 -9.30324 -8.21236 -6.38082 0.83729 1.39966 1.41704 1.49583 2.01445 2.26641 2.38133 3.05206 3.55785 4.02586 4.15204 4.30036 4.52198 4.56397 4.79862 4.86424 4.91500 4.96864 5.23140 5.40278 5.50284 5.67385 5.69864 6.06404 6.42706 6.75190 6.89286 7.23100 7.32920 8.84995 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.029567 B = 0.014238 C = 0.011214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.784412 B = 1966.039487 C = 2496.195352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.050 4.050 3 C -0.118 4.118 4 O -0.219 6.219 5 C 0.233 3.767 6 C 0.122 3.878 7 H 0.060 0.940 8 C -0.530 4.530 9 H 0.066 0.934 10 C 0.021 3.979 11 N -0.901 5.901 12 Si 0.960 3.040 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.256 1.256 16 C 0.090 3.910 17 N -0.844 5.844 18 N -0.541 5.541 19 H 0.073 0.927 20 H 0.105 0.895 21 H 0.064 0.936 22 H 0.250 0.750 23 H 0.264 0.736 24 H 0.054 0.946 25 H 0.023 0.977 26 H 0.346 0.654 27 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 7.495 -4.309 8.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.169 4.169 3 C -0.187 4.187 4 O -0.106 6.106 5 C 0.026 3.974 6 C 0.102 3.898 7 H 0.078 0.922 8 C -0.568 4.568 9 H 0.084 0.916 10 C -0.181 4.181 11 N -0.537 5.537 12 Si 0.784 3.216 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.180 1.180 16 C -0.042 4.042 17 N -0.375 5.375 18 N -0.272 5.272 19 H 0.092 0.908 20 H 0.123 0.877 21 H 0.083 0.917 22 H 0.266 0.734 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.159 0.841 27 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.468 6.190 -4.168 7.860 hybrid contribution 0.917 1.491 1.028 2.030 sum -1.551 7.681 -3.140 8.442 Atomic orbital electron populations 1.20121 0.84473 1.04028 1.03021 1.22598 0.99850 0.88607 1.05807 1.25377 0.80132 1.02037 1.11150 1.84417 1.31375 1.24768 1.70060 1.28064 0.96161 0.79024 0.94179 1.17517 0.85408 0.91993 0.94911 0.92156 1.21092 1.14974 1.26243 0.94461 0.91633 1.25911 0.95751 0.93910 1.02547 1.70134 1.31909 1.23811 1.27838 0.85587 0.79682 0.77916 0.78391 1.20176 1.21184 1.18021 1.21492 0.93476 0.93030 0.96178 1.58430 1.15658 1.55503 1.07923 1.70450 1.01879 1.32568 1.22264 0.90813 0.87656 0.91656 0.73449 0.92715 0.92745 0.95898 0.84106 0.83705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.43 71.23 0.74 -0.97 15 2 C -0.05 -2.02 7.11 41.26 0.29 -1.72 15 3 C -0.12 -4.36 12.08 66.93 0.81 -3.55 15 4 O -0.22 -10.12 10.77 -3.63 -0.04 -10.16 15 5 C 0.23 11.99 6.83 88.34 0.60 12.59 15 6 C 0.12 6.34 2.47 -12.28 -0.03 6.31 15 7 H 0.06 3.63 7.50 -2.39 -0.02 3.61 15 8 C -0.53 -28.55 7.45 25.60 0.19 -28.36 15 9 H 0.07 3.38 7.82 -2.91 -0.02 3.35 15 10 C 0.02 1.18 5.45 84.65 0.46 1.65 15 11 N -0.90 -53.74 12.91 21.45 0.28 -53.46 15 12 Si 0.96 43.21 29.54 68.60 2.03 45.24 15 13 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 14 H -0.29 -12.82 7.11 99.48 0.71 -12.11 15 15 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 16 C 0.09 3.81 6.19 86.30 0.53 4.34 15 17 N -0.84 -31.75 9.57 -186.71 -1.79 -33.54 15 18 N -0.54 -27.79 11.29 -291.98 -3.30 -31.09 15 19 H 0.07 2.01 8.14 -2.38 -0.02 1.99 15 20 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 21 H 0.06 1.92 8.14 -2.39 -0.02 1.90 15 22 H 0.25 6.05 8.06 -2.91 -0.02 6.03 15 23 H 0.26 15.04 8.31 -92.71 -0.77 14.27 15 24 H 0.05 2.19 8.14 -2.38 -0.02 2.17 15 25 H 0.02 0.93 8.14 -2.39 -0.02 0.91 15 26 H 0.35 10.17 9.08 -89.70 -0.81 9.36 15 27 H 0.35 13.36 8.25 -89.69 -0.74 12.62 15 Total: -1.00 -68.58 243.14 0.42 -68.16 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.37 Total: 24.56 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 3.60 Total: -9.72 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -4.81 Total: -118.09 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.04 Total: -10.16 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -68.58 0.42 -68.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260458246.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.697 kcal (2) G-P(sol) polarization free energy of solvation -68.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds