Wall clock time and date at job start Mon Mar 30 2020 02:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30262 * 125.61772 * 2 1 4 4 C 1.34478 * 108.70237 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.16993 * 180.02562 * 4 3 2 6 6 C 1.34335 * 107.66965 * 0.02562 * 4 3 2 7 7 C 1.50697 * 126.44714 * 179.97438 * 6 4 3 8 8 H 1.09001 * 109.46613 * 15.00301 * 7 6 4 9 9 N 1.46906 * 109.46982 * 135.00088 * 7 6 4 10 10 C 1.50698 * 109.47576 * 255.00335 * 7 6 4 11 11 H 1.08004 * 119.99528 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00356 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99554 * 359.97438 * 12 10 7 14 14 Si 1.86790 * 120.00086 * 179.97438 * 12 10 7 15 15 H 1.48502 * 109.47245 * 89.99579 * 14 12 10 16 16 H 1.48501 * 109.47356 * 209.99508 * 14 12 10 17 17 H 1.48499 * 109.47321 * 329.99647 * 14 12 10 18 18 O 1.33968 * 125.62443 * 180.28625 * 2 1 3 19 19 H 1.09007 * 109.46640 * 90.02291 * 1 2 3 20 20 H 1.08998 * 109.47292 * 210.01727 * 1 2 3 21 21 H 1.08992 * 109.47488 * 330.02557 * 1 2 3 22 22 H 1.09007 * 109.47177 * 270.00332 * 5 4 3 23 23 H 1.08997 * 109.47144 * 29.99826 * 5 4 3 24 24 H 1.08993 * 109.47502 * 150.00245 * 5 4 3 25 25 H 1.00896 * 111.00309 * 60.00059 * 9 7 6 26 26 H 1.00902 * 110.99923 * 183.96223 * 9 7 6 27 27 H 0.97005 * 119.99198 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6677 0.0006 5 6 4.7570 1.5728 0.0013 6 6 3.5698 -0.6756 0.0004 7 6 4.7937 -1.5548 0.0003 8 1 5.6679 -0.9606 0.2664 9 7 4.6199 -2.6361 0.9795 10 6 4.9874 -2.1463 -1.3722 11 1 4.2932 -1.9095 -2.1650 12 6 6.0500 -2.9905 -1.6155 13 7 6.8949 -3.2791 -0.6498 14 14 6.2895 -3.7242 -3.3165 15 1 7.1423 -2.8205 -4.1298 16 1 6.9476 -5.0499 -3.1956 17 1 4.9690 -3.8855 -3.9765 18 8 2.2873 -1.0889 -0.0054 19 1 -0.3633 -0.0004 -1.0278 20 1 -0.3634 -0.8898 0.5141 21 1 -0.3634 0.8901 0.5134 22 1 5.0480 1.7912 -1.0262 23 1 4.5127 2.5025 0.5151 24 1 5.5818 1.0794 0.5154 25 1 3.8153 -3.2017 0.7546 26 1 5.4528 -3.2018 1.0450 27 1 7.6427 -3.8728 -0.8211 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260461120.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:51 Heat of formation + Delta-G solvation = -19.740628 kcal Electronic energy + Delta-G solvation = -12384.662822 eV Core-core repulsion = 10142.509881 eV Total energy + Delta-G solvation = -2242.152940 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.13270 -36.96378 -35.97343 -33.93584 -32.64604 -30.14641 -28.64334 -27.03558 -23.72811 -22.47154 -21.28016 -18.83039 -17.59760 -17.49147 -16.69826 -16.22943 -15.25721 -14.86213 -14.48043 -14.16770 -13.79262 -13.63106 -13.46581 -13.36860 -13.05038 -12.83218 -12.77820 -12.19055 -12.03928 -11.75198 -11.39630 -10.81774 -9.53468 -9.21053 -8.23677 -6.50777 0.70126 1.35539 1.37465 1.47384 1.75844 1.97104 2.32597 2.95042 3.23780 3.99342 4.10134 4.43639 4.55324 4.56617 4.67235 4.78360 4.90056 4.91675 5.06942 5.25704 5.41478 5.52594 5.61903 5.86618 6.43877 6.70230 6.89485 6.95606 7.25160 8.71823 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.042484 B = 0.010983 C = 0.010473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.908624 B = 2548.671650 C = 2672.814328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.154 3.846 3 N -0.502 5.502 4 C -0.062 4.062 5 C -0.056 4.056 6 C -0.005 4.005 7 C 0.291 3.709 8 H 0.054 0.946 9 N -0.843 5.843 10 C -0.573 4.573 11 H 0.040 0.960 12 C 0.032 3.968 13 N -0.908 5.908 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.273 1.273 17 H -0.277 1.277 18 O -0.213 6.213 19 H 0.104 0.896 20 H 0.102 0.898 21 H 0.113 0.887 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.320 0.680 26 H 0.354 0.646 27 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 3.753 0.117 8.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.053 4.053 3 N -0.234 5.234 4 C -0.181 4.181 5 C -0.114 4.114 6 C -0.059 4.059 7 C 0.181 3.819 8 H 0.072 0.928 9 N -0.372 5.372 10 C -0.612 4.612 11 H 0.058 0.942 12 C -0.170 4.170 13 N -0.547 5.547 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.198 1.198 17 H -0.202 1.202 18 O -0.100 6.100 19 H 0.123 0.877 20 H 0.121 0.879 21 H 0.132 0.868 22 H 0.091 0.909 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.129 0.871 26 H 0.170 0.830 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.668 4.814 0.719 9.082 hybrid contribution 0.801 -1.745 -1.661 2.539 sum -6.867 3.069 -0.942 7.580 Atomic orbital electron populations 1.20432 0.77803 1.06266 1.05753 1.27340 0.98279 0.78452 1.01263 1.70193 1.01698 1.31232 1.20262 1.21790 0.94140 0.92550 1.09606 1.20024 0.91150 0.97339 1.02843 1.24079 0.83502 0.95521 1.02784 1.17451 0.85118 0.88830 0.90548 0.92807 1.59429 1.09582 1.17454 1.50777 1.21846 1.12185 1.30126 0.97043 0.94176 1.25677 0.94340 0.95811 1.01170 1.69799 1.15176 1.36129 1.33554 0.85457 0.78135 0.78063 0.79397 1.19704 1.19838 1.20182 1.84352 1.17125 1.38360 1.70158 0.87716 0.87895 0.86816 0.90872 0.89731 0.91120 0.87107 0.82990 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.03 10.51 71.23 0.75 -0.28 15 2 C 0.15 5.79 8.34 88.34 0.74 6.53 15 3 N -0.50 -20.86 11.29 -291.98 -3.30 -24.16 15 4 C -0.06 -2.76 7.11 41.26 0.29 -2.46 15 5 C -0.06 -2.08 10.17 71.23 0.72 -1.36 15 6 C -0.01 -0.25 6.12 24.79 0.15 -0.10 15 7 C 0.29 15.11 3.10 43.42 0.13 15.25 15 8 H 0.05 2.96 6.84 -2.39 -0.02 2.94 15 9 N -0.84 -41.81 9.18 -174.95 -1.61 -43.42 15 10 C -0.57 -31.57 8.71 25.60 0.22 -31.34 15 11 H 0.04 2.29 7.74 -2.91 -0.02 2.27 15 12 C 0.03 1.68 5.38 84.65 0.46 2.14 15 13 N -0.91 -48.72 11.54 21.45 0.25 -48.48 15 14 Si 0.96 42.26 29.54 68.60 2.03 44.29 15 15 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 15 17 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 18 O -0.21 -9.60 10.77 -3.77 -0.04 -9.64 15 19 H 0.10 1.98 8.14 -2.38 -0.02 1.96 15 20 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.11 2.10 8.14 -2.39 -0.02 2.08 15 22 H 0.07 2.57 8.14 -2.38 -0.02 2.55 15 23 H 0.08 2.69 8.14 -2.39 -0.02 2.67 15 24 H 0.07 2.62 7.03 -2.39 -0.02 2.60 15 25 H 0.32 15.49 8.97 -89.70 -0.80 14.68 15 26 H 0.35 18.18 7.08 -89.69 -0.63 17.54 15 27 H 0.27 13.83 8.31 -92.70 -0.77 13.06 15 Total: -1.00 -62.52 239.75 0.56 -61.96 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.24 Total: 31.07 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 3.47 Total: -11.63 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -4.66 Total: -116.05 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.04 Total: -9.64 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -62.52 0.56 -61.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461120.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.223 kcal (2) G-P(sol) polarization free energy of solvation -62.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds