Wall clock time and date at job start Mon Mar 30 2020 02:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34484 * 126.16699 * 2 1 4 4 C 1.30252 * 108.69907 * 180.26868 * 3 2 1 5 5 O 1.33966 * 108.76488 * 359.75819 * 4 3 2 6 6 C 1.34332 * 126.16762 * 179.85338 * 2 1 3 7 7 C 1.50697 * 126.43865 * 0.02562 * 6 2 1 8 8 H 1.09002 * 109.47489 * 359.70931 * 7 6 2 9 9 C 1.50703 * 109.47085 * 119.71086 * 7 6 2 10 10 H 1.08000 * 120.00226 * 359.97438 * 9 7 6 11 11 C 1.37876 * 119.99741 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00557 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 119.99840 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47337 * 59.99624 * 13 11 9 15 15 H 1.48502 * 109.47220 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47168 * 299.99658 * 13 11 9 17 17 C 1.53000 * 109.47204 * 239.70721 * 7 6 2 18 18 N 1.46901 * 109.46769 * 64.99941 * 17 7 6 19 19 H 1.09001 * 109.47221 * 270.14578 * 1 2 3 20 20 H 1.09006 * 109.47134 * 30.14336 * 1 2 3 21 21 H 1.08999 * 109.47708 * 150.14562 * 1 2 3 22 22 H 1.08001 * 125.61986 * 179.73753 * 4 3 2 23 23 H 0.96999 * 120.00539 * 180.02562 * 12 11 9 24 24 H 1.09002 * 109.47398 * 185.00236 * 17 7 6 25 25 H 1.09001 * 109.47194 * 305.00417 * 17 7 6 26 26 H 1.00908 * 110.99847 * 180.02562 * 18 17 7 27 27 H 1.00899 * 111.00283 * 303.95539 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5430 0.6947 -0.0058 5 8 3.5734 -0.6446 -0.0043 6 6 2.2997 -1.0845 0.0028 7 6 1.8492 -2.5225 0.0059 8 1 0.7599 -2.5621 0.0108 9 6 2.3715 -3.2152 -1.2264 10 1 2.9695 -2.6687 -1.9406 11 6 2.0850 -4.5465 -1.4425 12 7 1.3565 -5.2120 -0.5731 13 14 2.7318 -5.4049 -2.9703 14 1 4.2159 -5.3515 -2.9773 15 1 2.2880 -6.8221 -2.9671 16 1 2.2062 -4.7239 -4.1807 17 6 2.3907 -3.2239 1.2533 18 7 1.7882 -2.6252 2.4519 19 1 -0.3634 0.0026 1.0277 20 1 -0.3634 0.8887 -0.5161 21 1 -0.3634 -0.8912 -0.5115 22 1 4.4065 1.3434 -0.0113 23 1 1.1553 -6.1486 -0.7249 24 1 2.1404 -4.2839 1.2116 25 1 3.4737 -3.1075 1.2942 26 1 2.1304 -3.0713 3.2898 27 1 1.9514 -1.6299 2.4800 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260462502.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:35 Heat of formation + Delta-G solvation = 9.491954 kcal Electronic energy + Delta-G solvation = -12560.853875 eV Core-core repulsion = 10319.968554 eV Total energy + Delta-G solvation = -2240.885321 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.53994 -35.46194 -34.34202 -32.31910 -31.05528 -28.61024 -26.06465 -23.99775 -22.33818 -20.68440 -19.44354 -16.77379 -16.26918 -15.67661 -14.98724 -14.59034 -14.01870 -13.65460 -13.21670 -12.60880 -12.27864 -12.02378 -11.55808 -11.19339 -10.93810 -10.69003 -10.58991 -10.31341 -10.23499 -9.54020 -9.48424 -8.60693 -7.81461 -7.66398 -6.16905 -4.26734 2.34254 3.24861 3.29386 3.31863 3.39355 3.65626 4.31529 4.81203 5.10150 5.61676 5.66231 5.75993 6.21369 6.23406 6.40586 6.54891 6.62291 6.72320 6.89848 7.09509 7.40607 7.59488 7.73625 8.01371 8.18336 8.26025 8.47787 8.75197 9.38890 10.87503 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037715 B = 0.012745 C = 0.011531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.226396 B = 2196.470876 C = 2427.605461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.061 4.061 3 N -0.486 5.486 4 C 0.118 3.882 5 O -0.201 6.201 6 C 0.029 3.971 7 C 0.125 3.875 8 H 0.073 0.927 9 C -0.522 4.522 10 H 0.059 0.941 11 C 0.067 3.933 12 N -0.883 5.883 13 Si 0.900 3.100 14 H -0.276 1.276 15 H -0.284 1.284 16 H -0.275 1.275 17 C 0.064 3.936 18 N -0.851 5.851 19 H 0.065 0.935 20 H 0.061 0.939 21 H 0.076 0.924 22 H 0.236 0.764 23 H 0.266 0.734 24 H 0.114 0.886 25 H 0.002 0.998 26 H 0.324 0.676 27 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.002 5.510 2.276 6.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.180 4.180 3 N -0.216 5.216 4 C -0.108 4.108 5 O -0.087 6.087 6 C -0.025 4.025 7 C 0.106 3.894 8 H 0.091 0.909 9 C -0.560 4.560 10 H 0.077 0.923 11 C -0.136 4.136 12 N -0.520 5.520 13 Si 0.727 3.273 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.200 1.200 17 C -0.066 4.066 18 N -0.378 5.378 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.095 0.905 22 H 0.252 0.748 23 H 0.076 0.924 24 H 0.132 0.868 25 H 0.020 0.980 26 H 0.134 0.866 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.078 5.649 1.996 6.088 hybrid contribution 1.798 -0.690 -0.596 2.016 sum 2.876 4.959 1.400 5.901 Atomic orbital electron populations 1.19960 0.87162 1.02476 1.02020 1.21357 0.97718 0.87637 1.11312 1.70153 1.01480 1.32458 1.17502 1.27588 0.97209 0.80406 1.05578 1.84462 1.31449 1.23516 1.69252 1.24578 0.79230 0.99679 0.98997 1.17737 0.97737 0.79538 0.94421 0.90906 1.20938 1.34133 0.95473 1.05480 0.92287 1.24954 0.94644 0.97149 0.96873 1.69847 1.37085 1.10035 1.35033 0.86522 0.79354 0.78429 0.83004 1.20134 1.20984 1.20037 1.22130 0.93569 1.02961 0.87939 1.58981 1.66573 1.07042 1.05192 0.91635 0.92028 0.90515 0.74834 0.92384 0.86784 0.97990 0.86572 0.86961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.06 10.07 36.00 0.36 -0.70 15 2 C -0.06 -1.29 7.11 -82.81 -0.59 -1.88 15 3 N -0.49 -9.67 11.29 -11.18 -0.13 -9.80 15 4 C 0.12 2.10 13.23 52.09 0.69 2.79 15 5 O -0.20 -4.30 10.78 5.37 0.06 -4.24 15 6 C 0.03 0.65 4.86 -35.69 -0.17 0.48 15 7 C 0.12 3.08 2.33 -92.92 -0.22 2.86 15 8 H 0.07 1.92 6.82 -51.93 -0.35 1.56 15 9 C -0.52 -14.09 8.55 -34.44 -0.29 -14.39 15 10 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 11 C 0.07 1.78 5.29 -17.82 -0.09 1.68 15 12 N -0.88 -24.02 11.29 55.43 0.63 -23.40 15 13 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 15 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 17 C 0.06 1.50 6.07 -3.82 -0.02 1.48 15 18 N -0.85 -17.01 9.62 -10.37 -0.10 -17.11 15 19 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 20 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.08 1.42 7.16 -51.93 -0.37 1.05 15 22 H 0.24 2.79 8.06 -52.49 -0.42 2.36 15 23 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 24 H 0.11 2.96 5.95 -51.93 -0.31 2.65 15 25 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 15 26 H 0.32 5.63 9.08 -39.29 -0.36 5.27 15 27 H 0.32 6.19 8.07 -39.29 -0.32 5.88 15 LS Contribution 236.97 15.07 3.57 3.57 Total: -1.00 -29.11 236.97 -4.27 -33.38 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -2.94 Total: 9.56 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.34 Total: -7.67 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.40 Total: -50.30 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: 0.06 Total: -4.24 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.11 -4.27 -33.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462502.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.877 kcal (2) G-P(sol) polarization free energy of solvation -29.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds