Wall clock time and date at job start Mon Mar 30 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.34484 * 126.16699 * 2 1 4 4 C 1.30252 * 108.69907 * 180.26868 * 3 2 1 5 5 O 1.33966 * 108.76488 * 359.75819 * 4 3 2 6 6 C 1.34332 * 126.16762 * 179.85338 * 2 1 3 7 7 C 1.50697 * 126.43865 * 0.02562 * 6 2 1 8 8 H 1.09002 * 109.47489 * 359.70931 * 7 6 2 9 9 C 1.50703 * 109.47085 * 119.71086 * 7 6 2 10 10 H 1.08000 * 120.00226 * 359.97438 * 9 7 6 11 11 C 1.37876 * 119.99741 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00557 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 119.99840 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47337 * 59.99624 * 13 11 9 15 15 H 1.48502 * 109.47220 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47168 * 299.99658 * 13 11 9 17 17 C 1.53000 * 109.47204 * 239.70721 * 7 6 2 18 18 N 1.46901 * 109.46769 * 64.99941 * 17 7 6 19 19 H 1.09001 * 109.47221 * 270.14578 * 1 2 3 20 20 H 1.09006 * 109.47134 * 30.14336 * 1 2 3 21 21 H 1.08999 * 109.47708 * 150.14562 * 1 2 3 22 22 H 1.08001 * 125.61986 * 179.73753 * 4 3 2 23 23 H 0.96999 * 120.00539 * 180.02562 * 12 11 9 24 24 H 1.09002 * 109.47398 * 185.00236 * 17 7 6 25 25 H 1.09001 * 109.47194 * 305.00417 * 17 7 6 26 26 H 1.00908 * 110.99847 * 180.02562 * 18 17 7 27 27 H 1.00899 * 111.00283 * 303.95539 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5430 0.6947 -0.0058 5 8 3.5734 -0.6446 -0.0043 6 6 2.2997 -1.0845 0.0028 7 6 1.8492 -2.5225 0.0059 8 1 0.7599 -2.5621 0.0108 9 6 2.3715 -3.2152 -1.2264 10 1 2.9695 -2.6687 -1.9406 11 6 2.0850 -4.5465 -1.4425 12 7 1.3565 -5.2120 -0.5731 13 14 2.7318 -5.4049 -2.9703 14 1 4.2159 -5.3515 -2.9773 15 1 2.2880 -6.8221 -2.9671 16 1 2.2062 -4.7239 -4.1807 17 6 2.3907 -3.2239 1.2533 18 7 1.7882 -2.6252 2.4519 19 1 -0.3634 0.0026 1.0277 20 1 -0.3634 0.8887 -0.5161 21 1 -0.3634 -0.8912 -0.5115 22 1 4.4065 1.3434 -0.0113 23 1 1.1553 -6.1486 -0.7249 24 1 2.1404 -4.2839 1.2116 25 1 3.4737 -3.1075 1.2942 26 1 2.1304 -3.0713 3.2898 27 1 1.9514 -1.6299 2.4800 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462502.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:34 Heat of formation + Delta-G solvation = -13.681422 kcal Electronic energy + Delta-G solvation = -12561.858748 eV Core-core repulsion = 10319.968554 eV Total energy + Delta-G solvation = -2241.890194 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.11226 -37.30205 -35.91204 -34.25823 -32.67345 -30.34247 -27.70476 -25.92694 -23.96043 -22.31372 -21.16497 -18.68798 -17.82782 -17.37578 -16.81488 -16.30323 -15.71244 -15.35476 -14.92140 -14.05895 -13.93808 -13.81680 -13.20390 -12.97305 -12.76606 -12.52853 -12.39995 -12.07218 -11.83299 -11.45333 -11.21935 -10.62323 -9.50984 -9.31109 -8.18468 -6.36062 0.77195 1.42048 1.42089 1.50813 1.84205 2.14561 2.39452 3.06958 3.45963 3.95584 4.12883 4.18937 4.57404 4.75888 4.81883 4.87741 4.93032 5.06503 5.27700 5.44896 5.61817 5.69921 5.76104 6.10854 6.39509 6.62374 6.76006 6.92371 7.32651 8.84424 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.037715 B = 0.012745 C = 0.011531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.226396 B = 2196.470876 C = 2427.605461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.058 4.058 3 N -0.507 5.507 4 C 0.147 3.853 5 O -0.219 6.219 6 C -0.009 4.009 7 C 0.130 3.870 8 H 0.049 0.951 9 C -0.544 4.544 10 H 0.045 0.955 11 C 0.026 3.974 12 N -0.903 5.903 13 Si 0.958 3.042 14 H -0.273 1.273 15 H -0.276 1.276 16 H -0.273 1.273 17 C 0.078 3.922 18 N -0.845 5.845 19 H 0.079 0.921 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.292 0.708 23 H 0.268 0.732 24 H 0.088 0.912 25 H -0.008 1.008 26 H 0.340 0.660 27 H 0.327 0.673 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.675 6.494 2.178 7.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.176 4.176 3 N -0.237 5.237 4 C -0.079 4.079 5 O -0.105 6.105 6 C -0.062 4.062 7 C 0.111 3.889 8 H 0.067 0.933 9 C -0.582 4.582 10 H 0.064 0.936 11 C -0.175 4.175 12 N -0.541 5.541 13 Si 0.783 3.217 14 H -0.198 1.198 15 H -0.201 1.201 16 H -0.198 1.198 17 C -0.052 4.052 18 N -0.373 5.373 19 H 0.098 0.902 20 H 0.098 0.902 21 H 0.083 0.917 22 H 0.307 0.693 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.011 0.989 26 H 0.153 0.847 27 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.731 6.640 1.916 7.125 hybrid contribution 1.632 -0.883 -0.533 1.930 sum 3.363 5.757 1.384 6.810 Atomic orbital electron populations 1.20020 0.85778 1.02717 1.03038 1.21728 0.98840 0.87531 1.09479 1.70220 1.02266 1.31938 1.19239 1.28942 0.98326 0.79461 1.01141 1.84437 1.30980 1.25288 1.69829 1.24099 0.80159 0.99080 1.02824 1.17401 0.96212 0.81286 0.94051 0.93317 1.21163 1.34446 0.96120 1.06453 0.93637 1.25653 0.94750 0.97631 0.99476 1.69952 1.37616 1.10249 1.36283 0.85610 0.78781 0.77642 0.79665 1.19821 1.20089 1.19820 1.21773 0.92897 1.01478 0.89097 1.58829 1.66171 1.07523 1.04816 0.90200 0.90229 0.91727 0.69339 0.92222 0.89386 0.98944 0.84731 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.05 10.07 71.23 0.72 -1.34 15 2 C -0.06 -2.36 7.11 41.26 0.29 -2.07 15 3 N -0.51 -18.97 11.29 -304.07 -3.43 -22.41 15 4 C 0.15 4.77 13.23 130.48 1.73 6.50 15 5 O -0.22 -9.05 10.78 -3.69 -0.04 -9.09 15 6 C -0.01 -0.38 4.86 24.79 0.12 -0.26 15 7 C 0.13 6.52 2.33 -12.29 -0.03 6.49 15 8 H 0.05 2.65 6.82 -2.39 -0.02 2.63 15 9 C -0.54 -29.89 8.55 25.60 0.22 -29.67 15 10 H 0.05 2.55 7.74 -2.91 -0.02 2.53 15 11 C 0.03 1.39 5.29 84.65 0.45 1.83 15 12 N -0.90 -49.83 11.29 21.45 0.24 -49.59 15 13 Si 0.96 42.56 29.54 68.60 2.03 44.58 15 14 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 15 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 16 H -0.27 -11.95 7.11 99.48 0.71 -11.25 15 17 C 0.08 3.73 6.07 86.30 0.52 4.25 15 18 N -0.84 -33.41 9.62 -186.71 -1.80 -35.20 15 19 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 20 H 0.08 2.47 8.14 -2.38 -0.02 2.45 15 21 H 0.06 2.41 7.16 -2.39 -0.02 2.40 15 22 H 0.29 5.43 8.06 -2.91 -0.02 5.40 15 23 H 0.27 14.02 8.31 -92.71 -0.77 13.25 15 24 H 0.09 4.67 5.95 -2.39 -0.01 4.65 15 25 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 26 H 0.34 11.52 9.08 -89.69 -0.81 10.70 15 27 H 0.33 12.38 8.07 -89.69 -0.72 11.65 15 Total: -1.00 -62.36 236.97 0.68 -61.68 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: -0.34 Total: 24.29 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.02 Total: -14.26 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -4.99 Total: -107.20 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.04 Total: -9.09 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -62.36 0.68 -61.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462502.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.998 kcal (2) G-P(sol) polarization free energy of solvation -62.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds