Wall clock time and date at job start Mon Mar 30 2020 02:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34475 * 126.17158 * 2 1 4 4 C 1.30253 * 108.70630 * 180.27205 * 3 2 1 5 5 O 1.33970 * 108.75978 * 359.75146 * 4 3 2 6 6 C 1.34336 * 126.16377 * 179.85521 * 2 1 3 7 7 C 1.50699 * 126.44366 * 359.97438 * 6 2 1 8 8 H 1.09004 * 109.46963 * 344.70985 * 7 6 2 9 9 N 1.46905 * 109.47256 * 224.71541 * 7 6 2 10 10 C 1.52997 * 109.47337 * 104.71293 * 7 6 2 11 11 C 1.50701 * 109.47212 * 184.99952 * 10 7 6 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 7 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 7 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 H 1.08996 * 109.47074 * 270.14809 * 1 2 3 20 20 H 1.09001 * 109.47028 * 30.14605 * 1 2 3 21 21 H 1.08999 * 109.47582 * 150.14934 * 1 2 3 22 22 H 1.07997 * 125.62562 * 179.73535 * 4 3 2 23 23 H 1.00898 * 110.99705 * 300.00162 * 9 7 6 24 24 H 1.00897 * 110.99904 * 63.95071 * 9 7 6 25 25 H 1.09002 * 109.47153 * 64.99954 * 10 7 6 26 26 H 1.09001 * 109.46832 * 305.00144 * 10 7 6 27 27 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3006 1.0856 0.0000 4 6 3.5431 0.6946 -0.0059 5 8 3.5734 -0.6447 -0.0042 6 6 2.2996 -1.0845 0.0027 7 6 1.8492 -2.5226 0.0069 8 1 0.7947 -2.5722 0.2785 9 7 2.6424 -3.2814 0.9832 10 6 2.0458 -3.1227 -1.3866 11 6 1.4830 -4.5204 -1.4157 12 1 1.0300 -4.9387 -0.5290 13 6 1.5455 -5.2648 -2.5746 14 7 2.0967 -4.7553 -3.6544 15 14 0.8472 -6.9970 -2.6108 16 1 -0.6022 -6.9532 -2.2903 17 1 1.0382 -7.5795 -3.9634 18 1 1.5510 -7.8355 -1.6074 19 1 -0.3633 0.0027 1.0276 20 1 -0.3633 0.8887 -0.5161 21 1 -0.3634 -0.8913 -0.5115 22 1 4.4066 1.3432 -0.0114 23 1 3.6243 -3.2506 0.7534 24 1 2.4797 -2.9454 1.9206 25 1 3.1097 -3.1545 -1.6218 26 1 1.5291 -2.5075 -2.1233 27 1 2.1411 -5.2791 -4.4696 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260478269.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:14 Heat of formation + Delta-G solvation = 8.716278 kcal Electronic energy + Delta-G solvation = -12240.341333 eV Core-core repulsion = 9999.422376 eV Total energy + Delta-G solvation = -2240.918956 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.96546 -35.72493 -34.78091 -32.49320 -30.77335 -28.40500 -27.02288 -24.35997 -22.32038 -20.99052 -19.77382 -16.95471 -16.38534 -16.03639 -15.39221 -14.57173 -14.38758 -13.93802 -13.09293 -12.94452 -12.60132 -12.15351 -11.83661 -11.23965 -10.90977 -10.73148 -10.64786 -10.40829 -10.35165 -9.74046 -9.19580 -8.37273 -8.27412 -8.07632 -5.96813 -3.97209 1.85618 2.97906 3.16500 3.37808 3.41664 3.45168 4.43755 4.50599 5.15551 5.23773 5.30109 5.42717 5.72086 5.83922 5.94780 6.10792 6.26313 6.41531 6.56051 6.69776 7.40737 7.58811 7.78900 7.98481 8.03724 8.06965 8.41321 9.08209 9.65294 11.14961 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.054210 B = 0.009033 C = 0.008911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.389920 B = 3098.929848 C = 3141.294317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.035 4.035 3 N -0.487 5.487 4 C 0.144 3.856 5 O -0.201 6.201 6 C -0.050 4.050 7 C 0.178 3.822 8 H 0.104 0.896 9 N -0.817 5.817 10 C 0.034 3.966 11 C -0.500 4.500 12 H 0.064 0.936 13 C 0.053 3.947 14 N -0.901 5.901 15 Si 0.897 3.103 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.277 1.277 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.243 0.757 23 H 0.341 0.659 24 H 0.325 0.675 25 H 0.020 0.980 26 H 0.023 0.977 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 7.630 7.504 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.154 4.154 3 N -0.216 5.216 4 C -0.082 4.082 5 O -0.087 6.087 6 C -0.105 4.105 7 C 0.066 3.934 8 H 0.121 0.879 9 N -0.343 5.343 10 C -0.004 4.004 11 C -0.538 4.538 12 H 0.083 0.917 13 C -0.148 4.148 14 N -0.541 5.541 15 Si 0.725 3.275 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.202 1.202 19 H 0.086 0.914 20 H 0.089 0.911 21 H 0.099 0.901 22 H 0.258 0.742 23 H 0.154 0.846 24 H 0.136 0.864 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.044 7.518 7.073 10.323 hybrid contribution 0.587 -0.399 -0.015 0.710 sum 0.631 7.119 7.058 10.044 Atomic orbital electron populations 1.20087 0.86789 1.03508 1.02252 1.21494 0.97948 0.87602 1.08399 1.70225 1.01482 1.32164 1.17775 1.27817 0.97367 0.79942 1.03105 1.84425 1.30681 1.24186 1.69405 1.25567 0.80289 1.00899 1.03790 1.20735 0.97077 0.77839 0.97776 0.87861 1.58763 1.12731 1.58870 1.03944 1.19196 0.97944 0.96057 0.87177 1.21037 1.37696 0.98312 0.96742 0.91738 1.25023 0.95700 0.98365 0.95681 1.69965 1.45050 1.37435 1.01623 0.86587 0.79490 0.84630 0.76833 1.20303 1.21555 1.20221 0.91389 0.91099 0.90094 0.74160 0.84567 0.86404 0.96218 0.95877 0.93031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 9.99 36.00 0.36 -0.66 15 2 C -0.03 -0.62 7.11 -82.81 -0.59 -1.21 15 3 N -0.49 -8.46 11.29 -11.18 -0.13 -8.59 15 4 C 0.14 2.16 13.23 52.09 0.69 2.85 15 5 O -0.20 -3.57 10.76 5.35 0.06 -3.51 15 6 C -0.05 -0.93 6.18 -35.69 -0.22 -1.15 15 7 C 0.18 3.58 3.00 -68.86 -0.21 3.37 15 8 H 0.10 2.00 7.18 -51.93 -0.37 1.63 15 9 N -0.82 -15.02 8.94 -5.65 -0.05 -15.07 15 10 C 0.03 0.85 4.60 -27.88 -0.13 0.72 15 11 C -0.50 -13.82 8.84 -34.44 -0.30 -14.12 15 12 H 0.06 1.75 7.74 -52.49 -0.41 1.35 15 13 C 0.05 1.50 5.46 -17.82 -0.10 1.40 15 14 N -0.90 -27.06 13.29 55.43 0.74 -26.32 15 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 15 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 18 H -0.28 -6.64 7.11 56.52 0.40 -6.23 15 19 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 20 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.08 1.21 7.45 -51.93 -0.39 0.82 15 22 H 0.24 2.25 8.06 -52.49 -0.42 1.83 15 23 H 0.34 6.22 8.98 -39.29 -0.35 5.87 15 24 H 0.32 4.99 9.06 -39.29 -0.36 4.64 15 25 H 0.02 0.54 8.14 -51.93 -0.42 0.12 15 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 LS Contribution 242.89 15.07 3.66 3.66 Total: -1.00 -31.99 242.89 -4.36 -36.35 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -3.12 Total: 5.56 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -0.50 Total: -8.79 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.56 Total: -49.98 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: 0.06 Total: -3.51 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.99 -4.36 -36.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478269.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.066 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds