Wall clock time and date at job start Mon Mar 30 2020 02:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47468 * 2 1 4 4 C 1.50703 * 109.47118 * 240.00058 * 2 1 3 5 5 H 1.08004 * 119.99818 * 245.62737 * 4 2 1 6 6 C 1.37872 * 120.00202 * 65.62539 * 4 2 1 7 7 N 1.31513 * 120.00137 * 197.21859 * 6 4 2 8 8 Si 1.86804 * 119.99806 * 17.49753 * 6 4 2 9 9 H 1.48500 * 109.46883 * 179.72538 * 8 6 4 10 10 H 1.48502 * 109.46964 * 299.72161 * 8 6 4 11 11 H 1.48500 * 109.47202 * 59.72585 * 8 6 4 12 12 C 1.50702 * 109.47063 * 120.00169 * 2 1 3 13 13 C 1.34820 * 125.77411 * 240.02553 * 12 2 1 14 14 C 1.41473 * 108.08381 * 179.97438 * 13 12 2 15 15 O 1.21789 * 126.19173 * 180.02562 * 14 13 12 16 16 N 1.34871 * 107.61519 * 359.97438 * 14 13 12 17 17 C 1.46496 * 126.16570 * 180.02562 * 16 14 13 18 18 N 1.36601 * 125.77176 * 59.71210 * 12 2 1 19 19 H 0.96994 * 125.91370 * 0.02562 * 18 12 2 20 20 H 1.09000 * 109.46981 * 306.25719 * 1 2 3 21 21 H 1.09008 * 109.46768 * 66.25509 * 1 2 3 22 22 H 1.08998 * 109.47439 * 186.25163 * 1 2 3 23 23 H 0.97000 * 119.99783 * 355.15578 * 7 6 4 24 24 H 1.08004 * 125.95857 * 359.95763 * 13 12 2 25 25 H 1.09002 * 109.47059 * 359.97438 * 17 16 14 26 26 H 1.09000 * 109.47585 * 119.97813 * 17 16 14 27 27 H 1.09002 * 109.47204 * 239.98219 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5763 -1.6385 -1.1340 6 6 1.7976 -0.1757 -2.4794 7 7 1.9218 -0.9281 -3.5509 8 14 1.3107 1.6197 -2.6502 9 1 1.1235 1.9473 -4.0865 10 1 0.0411 1.8600 -1.9182 11 1 2.3802 2.4789 -2.0818 12 6 2.0323 -0.7105 1.2305 13 6 2.8103 -0.1704 2.1900 14 6 3.0565 -1.1639 3.1666 15 8 3.7221 -1.0292 4.1776 16 7 2.4199 -2.2869 2.7759 17 6 2.4047 -3.5653 3.4911 18 7 1.7715 -2.0089 1.5652 19 1 1.2323 -2.6313 1.0527 20 1 -0.3633 0.6078 0.8287 21 1 -0.3633 0.4138 -0.9408 22 1 -0.3634 -1.0215 0.1119 23 1 2.2461 -1.8386 -3.4691 24 1 3.1811 0.8439 2.2096 25 1 2.9943 -3.4781 4.4037 26 1 1.3776 -3.8271 3.7457 27 1 2.8308 -4.3420 2.8561 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260478280.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:09 Heat of formation + Delta-G solvation = 8.673956 kcal Electronic energy + Delta-G solvation = -12338.413724 eV Core-core repulsion = 10097.492932 eV Total energy + Delta-G solvation = -2240.920792 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.49031 -38.33855 -36.47332 -34.31320 -32.52319 -30.86381 -27.70931 -26.73808 -23.82082 -21.86319 -21.13311 -19.61008 -18.71904 -17.01832 -16.78100 -16.01706 -15.73941 -15.24990 -14.61373 -14.31107 -14.18963 -14.14197 -13.47430 -13.45577 -12.93052 -12.75644 -12.32275 -11.80929 -11.54953 -11.06172 -10.91091 -10.39459 -10.07090 -8.91883 -8.72900 -6.39460 0.72136 0.81671 1.56037 1.64039 1.80018 2.26830 2.53331 2.92981 3.10275 3.84075 4.12520 4.36403 4.48784 4.56331 4.61822 4.68640 4.86475 4.96587 5.03711 5.27607 5.36006 5.58142 5.84741 6.03446 6.22362 6.53906 6.61779 7.24285 7.38368 8.65482 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.055973 B = 0.010241 C = 0.009640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.119851 B = 2733.576927 C = 2903.733599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 H 0.064 0.936 4 C -0.601 4.601 5 H 0.026 0.974 6 C -0.009 4.009 7 N -0.933 5.933 8 Si 1.075 2.925 9 H -0.295 1.295 10 H -0.231 1.231 11 H -0.265 1.265 12 C 0.253 3.747 13 C -0.405 4.405 14 C 0.517 3.483 15 O -0.614 6.614 16 N -0.426 5.426 17 C 0.094 3.906 18 N -0.478 5.478 19 H 0.450 0.550 20 H 0.061 0.939 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.254 0.746 24 H 0.157 0.843 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -1.677 8.135 9.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.639 4.639 5 H 0.044 0.956 6 C -0.209 4.209 7 N -0.568 5.568 8 Si 0.896 3.104 9 H -0.222 1.222 10 H -0.155 1.155 11 H -0.190 1.190 12 C 0.132 3.868 13 C -0.435 4.435 14 C 0.318 3.682 15 O -0.500 6.500 16 N -0.247 5.247 17 C -0.046 4.046 18 N -0.199 5.199 19 H 0.298 0.702 20 H 0.080 0.920 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.175 0.825 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.238 -0.829 7.733 9.377 hybrid contribution 0.726 -1.993 0.496 2.179 sum -4.512 -2.823 8.229 9.800 Atomic orbital electron populations 1.22160 0.94813 1.01555 1.01790 1.18192 0.94719 0.95986 0.87264 0.91805 1.21931 1.40560 1.09244 0.92157 0.95585 1.27093 0.93928 1.08222 0.91615 1.71012 1.43442 1.09619 1.32684 0.83704 0.79498 0.70751 0.76423 1.22201 1.15464 1.18976 1.21351 0.89653 0.82404 0.93380 1.21720 1.17773 1.03237 1.00738 1.17133 0.80832 0.83226 0.87028 1.90738 1.46119 1.82641 1.30521 1.48345 1.47901 1.14308 1.14172 1.22138 1.05029 0.80495 0.96887 1.44024 1.49103 1.12069 1.14689 0.70200 0.92025 0.92152 0.93047 0.93706 0.82495 0.88099 0.88589 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 8.85 71.98 0.64 -4.39 15 2 C 0.06 2.39 2.29 -12.28 -0.03 2.36 15 3 H 0.06 2.53 6.76 -2.39 -0.02 2.52 15 4 C -0.60 -30.01 8.81 25.60 0.23 -29.79 15 5 H 0.03 1.44 7.99 -2.91 -0.02 1.41 15 6 C -0.01 -0.48 5.29 84.65 0.45 -0.03 15 7 N -0.93 -53.91 13.70 21.45 0.29 -53.62 15 8 Si 1.08 44.35 26.29 68.60 1.80 46.16 15 9 H -0.30 -12.75 7.11 99.48 0.71 -12.04 15 10 H -0.23 -8.02 5.76 99.48 0.57 -7.45 15 11 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 12 C 0.25 9.77 5.65 41.03 0.23 10.00 15 13 C -0.40 -16.44 10.71 22.28 0.24 -16.20 15 14 C 0.52 21.55 7.95 85.02 0.68 22.23 15 15 O -0.61 -28.97 17.65 -4.63 -0.08 -29.05 15 16 N -0.43 -14.24 4.02 -493.70 -1.98 -16.22 15 17 C 0.09 2.10 11.53 127.77 1.47 3.57 15 18 N -0.48 -15.96 7.30 -47.38 -0.35 -16.30 15 19 H 0.45 12.86 8.96 -213.31 -1.91 10.95 15 20 H 0.06 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.06 2.16 4.88 -2.38 -0.01 2.15 15 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.25 14.90 8.73 -92.71 -0.81 14.09 15 24 H 0.16 6.05 8.06 -2.91 -0.02 6.03 15 25 H 0.10 2.33 7.76 -2.39 -0.02 2.31 15 26 H 0.10 1.58 8.14 -2.39 -0.02 1.56 15 27 H 0.09 1.59 8.14 -2.39 -0.02 1.57 15 Total: -1.00 -67.02 235.68 2.68 -64.34 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -0.90 Total: 16.95 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 3.90 Total: -12.24 kcal Atomic # 7 Polarization: -84.11 SS G_CDS: -2.03 Total: -86.15 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.08 Total: -29.05 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.80 Total: 46.16 kcal Total: -67.02 2.68 -64.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260478280.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.012 kcal (2) G-P(sol) polarization free energy of solvation -67.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds