Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34751 * 126.44618 * 2 1 4 4 C 1.33967 * 107.75653 * 180.25998 * 3 2 1 5 5 N 1.30255 * 108.75938 * 0.02562 * 4 3 2 6 6 C 1.34334 * 126.43970 * 180.30891 * 2 1 3 7 7 C 1.50696 * 126.16382 * 359.73584 * 6 2 1 8 8 H 1.09000 * 109.47588 * 15.00918 * 7 6 2 9 9 N 1.46909 * 109.46730 * 135.00282 * 7 6 2 10 10 C 1.52994 * 109.47341 * 255.00018 * 7 6 2 11 11 C 1.50701 * 109.47197 * 175.00409 * 10 7 6 12 12 H 1.08001 * 119.99971 * 0.02562 * 11 10 7 13 13 C 1.37879 * 120.00416 * 180.02562 * 11 10 7 14 14 N 1.31522 * 119.99520 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00463 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46960 * 90.00168 * 15 13 11 17 17 H 1.48505 * 109.47424 * 210.00063 * 15 13 11 18 18 H 1.48502 * 109.47298 * 330.00371 * 15 13 11 19 19 H 1.08994 * 109.47222 * 269.69605 * 1 2 3 20 20 H 1.09005 * 109.46678 * 29.69202 * 1 2 3 21 21 H 1.08998 * 109.47205 * 149.68594 * 1 2 3 22 22 H 1.07995 * 125.62290 * 179.97438 * 4 3 2 23 23 H 1.00900 * 110.99810 * 296.04604 * 9 7 6 24 24 H 1.00891 * 111.00046 * 60.00048 * 9 7 6 25 25 H 1.08998 * 109.47305 * 295.00383 * 10 7 6 26 26 H 1.09003 * 109.47295 * 55.00704 * 10 7 6 27 27 H 0.97002 * 119.99824 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3076 1.0840 0.0000 4 6 3.5766 0.6547 -0.0058 5 7 3.5782 -0.6479 -0.0099 6 6 2.3050 -1.0807 -0.0058 7 6 1.8544 -2.5187 -0.0080 8 1 0.7976 -2.5680 -0.2703 9 7 2.6391 -3.2761 -0.9923 10 6 2.0633 -3.1207 1.3829 11 6 1.5008 -4.5184 1.4151 12 1 1.0407 -4.9358 0.5316 13 6 1.5735 -5.2645 2.5723 14 7 2.1334 -4.7561 3.6483 15 14 0.8756 -6.9967 2.6123 16 1 1.9303 -7.9646 2.2170 17 1 0.4062 -7.3098 3.9860 18 1 -0.2645 -7.0931 1.6656 19 1 -0.3633 -0.0055 1.0276 20 1 -0.3633 0.8928 -0.5091 21 1 -0.3633 -0.8871 -0.5187 22 1 4.4537 1.2847 -0.0077 23 1 2.4682 -2.9388 -1.9277 24 1 3.6230 -3.2457 -0.7710 25 1 3.1292 -3.1528 1.6086 26 1 1.5531 -2.5066 2.1251 27 1 2.1842 -5.2808 4.4626 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260529806.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = 10.727520 kcal Electronic energy + Delta-G solvation = -12218.377891 eV Core-core repulsion = 9977.546148 eV Total energy + Delta-G solvation = -2240.831742 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.97554 -36.09379 -33.64324 -32.41399 -31.64724 -28.21072 -26.71032 -24.32288 -22.23763 -21.12887 -19.58970 -16.95524 -16.37501 -15.99682 -15.22851 -14.48203 -14.24936 -13.84919 -13.12952 -12.88614 -12.66795 -12.17506 -12.04951 -11.20327 -10.96928 -10.78416 -10.43175 -10.29143 -10.10169 -9.47931 -9.03965 -8.27306 -8.20727 -7.90811 -5.87041 -3.86122 1.78961 3.06779 3.09236 3.41777 3.47200 3.51263 4.47707 4.58647 5.11623 5.30609 5.39829 5.48570 5.57870 5.67314 5.81469 6.19635 6.33266 6.37828 6.64452 6.85546 7.59892 7.80560 7.96983 8.11073 8.17862 8.29733 8.56671 9.20084 9.75488 11.24926 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.054442 B = 0.008968 C = 0.008859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.185412 B = 3121.603904 C = 3159.997288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.059 4.059 3 O -0.214 6.214 4 C 0.149 3.851 5 N -0.474 5.474 6 C -0.029 4.029 7 C 0.174 3.826 8 H 0.083 0.917 9 N -0.815 5.815 10 C 0.039 3.961 11 C -0.494 4.494 12 H 0.063 0.937 13 C 0.050 3.950 14 N -0.903 5.903 15 Si 0.894 3.106 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.274 1.274 19 H 0.084 0.916 20 H 0.070 0.930 21 H 0.092 0.908 22 H 0.244 0.756 23 H 0.318 0.682 24 H 0.343 0.657 25 H 0.021 0.979 26 H 0.016 0.984 27 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 10.356 -7.636 12.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 O -0.101 6.101 4 C -0.077 4.077 5 N -0.203 5.203 6 C -0.151 4.151 7 C 0.061 3.939 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.001 3.999 11 C -0.533 4.533 12 H 0.081 0.919 13 C -0.150 4.150 14 N -0.543 5.543 15 Si 0.723 3.277 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.199 1.199 19 H 0.103 0.897 20 H 0.089 0.911 21 H 0.111 0.889 22 H 0.260 0.740 23 H 0.128 0.872 24 H 0.156 0.844 25 H 0.039 0.961 26 H 0.034 0.966 27 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.076 9.324 -7.208 11.835 hybrid contribution -0.148 0.603 0.050 0.622 sum -1.224 9.927 -7.158 12.300 Atomic orbital electron populations 1.20239 0.84208 1.03659 1.03924 1.23272 0.94944 0.84111 1.08907 1.84345 1.18385 1.36838 1.70495 1.27887 0.85592 0.91514 1.02700 1.70278 1.23429 1.09883 1.16728 1.23381 0.87764 1.00205 1.03733 1.20335 0.96274 0.80113 0.97174 0.89939 1.58901 1.13054 1.58581 1.03544 1.19085 0.97802 0.95504 0.87496 1.21154 1.36801 0.98572 0.96742 0.91881 1.25031 0.95906 0.98212 0.95802 1.69990 1.45321 1.37176 1.01817 0.86561 0.79279 0.85076 0.76815 1.20835 1.21611 1.19941 0.89730 0.91071 0.88909 0.74039 0.87171 0.84394 0.96100 0.96566 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.82 10.17 36.01 0.37 -0.46 15 2 C -0.06 -1.00 7.39 -35.68 -0.26 -1.26 15 3 O -0.21 -3.36 10.78 5.36 0.06 -3.31 15 4 C 0.15 2.20 13.23 52.09 0.69 2.89 15 5 N -0.47 -8.89 11.18 -11.18 -0.13 -9.01 15 6 C -0.03 -0.56 5.92 -82.81 -0.49 -1.05 15 7 C 0.17 3.70 3.08 -68.86 -0.21 3.48 15 8 H 0.08 1.68 6.84 -51.93 -0.35 1.32 15 9 N -0.81 -16.34 8.94 -5.65 -0.05 -16.39 15 10 C 0.04 1.03 4.60 -27.89 -0.13 0.90 15 11 C -0.49 -14.20 8.84 -34.44 -0.30 -14.50 15 12 H 0.06 1.79 7.74 -52.49 -0.41 1.38 15 13 C 0.05 1.47 5.46 -17.82 -0.10 1.37 15 14 N -0.90 -27.88 13.29 55.43 0.74 -27.14 15 15 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 15 16 H -0.28 -7.00 7.11 56.52 0.40 -6.60 15 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 18 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 19 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15 20 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 21 H 0.09 1.14 7.04 -51.93 -0.37 0.77 15 22 H 0.24 2.20 8.06 -52.49 -0.42 1.78 15 23 H 0.32 5.42 9.06 -39.29 -0.36 5.07 15 24 H 0.34 7.04 8.89 -39.30 -0.35 6.69 15 25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 15 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 LS Contribution 242.23 15.07 3.65 3.65 Total: -1.00 -33.48 242.23 -4.27 -37.75 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.08 Total: 5.78 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.44 Total: -8.62 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.56 Total: -52.54 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: 0.06 Total: -3.31 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -33.48 -4.27 -37.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529806.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.477 kcal (2) G-P(sol) polarization free energy of solvation -33.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds