Wall clock time and date at job start Mon Mar 30 2020 02:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34751 * 126.44618 * 2 1 4 4 C 1.33967 * 107.75653 * 180.25998 * 3 2 1 5 5 N 1.30255 * 108.75938 * 0.02562 * 4 3 2 6 6 C 1.34334 * 126.43970 * 180.30891 * 2 1 3 7 7 C 1.50696 * 126.16382 * 359.73584 * 6 2 1 8 8 H 1.09000 * 109.47588 * 15.00918 * 7 6 2 9 9 N 1.46909 * 109.46730 * 135.00282 * 7 6 2 10 10 C 1.52994 * 109.47341 * 255.00018 * 7 6 2 11 11 C 1.50701 * 109.47197 * 175.00409 * 10 7 6 12 12 H 1.08001 * 119.99971 * 0.02562 * 11 10 7 13 13 C 1.37879 * 120.00416 * 180.02562 * 11 10 7 14 14 N 1.31522 * 119.99520 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00463 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46960 * 90.00168 * 15 13 11 17 17 H 1.48505 * 109.47424 * 210.00063 * 15 13 11 18 18 H 1.48502 * 109.47298 * 330.00371 * 15 13 11 19 19 H 1.08994 * 109.47222 * 269.69605 * 1 2 3 20 20 H 1.09005 * 109.46678 * 29.69202 * 1 2 3 21 21 H 1.08998 * 109.47205 * 149.68594 * 1 2 3 22 22 H 1.07995 * 125.62290 * 179.97438 * 4 3 2 23 23 H 1.00900 * 110.99810 * 296.04604 * 9 7 6 24 24 H 1.00891 * 111.00046 * 60.00048 * 9 7 6 25 25 H 1.08998 * 109.47305 * 295.00383 * 10 7 6 26 26 H 1.09003 * 109.47295 * 55.00704 * 10 7 6 27 27 H 0.97002 * 119.99824 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3076 1.0840 0.0000 4 6 3.5766 0.6547 -0.0058 5 7 3.5782 -0.6479 -0.0099 6 6 2.3050 -1.0807 -0.0058 7 6 1.8544 -2.5187 -0.0080 8 1 0.7976 -2.5680 -0.2703 9 7 2.6391 -3.2761 -0.9923 10 6 2.0633 -3.1207 1.3829 11 6 1.5008 -4.5184 1.4151 12 1 1.0407 -4.9358 0.5316 13 6 1.5735 -5.2645 2.5723 14 7 2.1334 -4.7561 3.6483 15 14 0.8756 -6.9967 2.6123 16 1 1.9303 -7.9646 2.2170 17 1 0.4062 -7.3098 3.9860 18 1 -0.2645 -7.0931 1.6656 19 1 -0.3633 -0.0055 1.0276 20 1 -0.3633 0.8928 -0.5091 21 1 -0.3633 -0.8871 -0.5187 22 1 4.4537 1.2847 -0.0077 23 1 2.4682 -2.9388 -1.9277 24 1 3.6230 -3.2457 -0.7710 25 1 3.1292 -3.1528 1.6086 26 1 1.5531 -2.5066 2.1251 27 1 2.1842 -5.2808 4.4626 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260529806.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:08 Heat of formation + Delta-G solvation = -16.943792 kcal Electronic energy + Delta-G solvation = -12219.577809 eV Core-core repulsion = 9977.546148 eV Total energy + Delta-G solvation = -2242.031661 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.24997 -37.71597 -35.22475 -34.31204 -32.99132 -30.22029 -28.00459 -26.14516 -23.87323 -22.51512 -21.16445 -18.64460 -17.84283 -17.58598 -16.91731 -16.36491 -15.65155 -15.36633 -14.54539 -14.40768 -14.03652 -13.90114 -13.28443 -13.15613 -12.75306 -12.64625 -12.24485 -12.19182 -11.54213 -11.31561 -11.23711 -10.52396 -9.67214 -9.42446 -8.12022 -6.19657 0.55030 1.43764 1.46246 1.56997 1.75039 1.91000 2.47904 3.20989 3.33938 3.84156 3.95499 4.08394 4.28872 4.57284 4.67289 4.77011 4.90890 5.08677 5.19492 5.38072 5.44920 5.64109 5.85596 6.25332 6.43357 6.73760 6.84577 6.94916 7.47453 9.00514 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.054442 B = 0.008968 C = 0.008859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.185412 B = 3121.603904 C = 3159.997288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.052 4.052 3 O -0.211 6.211 4 C 0.170 3.830 5 N -0.518 5.518 6 C -0.066 4.066 7 C 0.186 3.814 8 H 0.092 0.908 9 N -0.820 5.820 10 C 0.051 3.949 11 C -0.507 4.507 12 H 0.066 0.934 13 C -0.008 4.008 14 N -0.942 5.942 15 Si 0.968 3.032 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.260 1.260 19 H 0.086 0.914 20 H 0.101 0.899 21 H 0.098 0.902 22 H 0.295 0.705 23 H 0.337 0.663 24 H 0.338 0.662 25 H -0.020 1.020 26 H -0.012 1.012 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 10.834 -8.666 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 O -0.099 6.099 4 C -0.057 4.057 5 N -0.247 5.247 6 C -0.187 4.187 7 C 0.074 3.926 8 H 0.109 0.891 9 N -0.347 5.347 10 C 0.013 3.987 11 C -0.546 4.546 12 H 0.085 0.915 13 C -0.204 4.204 14 N -0.584 5.584 15 Si 0.793 3.207 16 H -0.204 1.204 17 H -0.211 1.211 18 H -0.184 1.184 19 H 0.104 0.896 20 H 0.120 0.880 21 H 0.116 0.884 22 H 0.310 0.690 23 H 0.149 0.851 24 H 0.150 0.850 25 H -0.001 1.001 26 H 0.006 0.994 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.852 9.801 -8.266 12.955 hybrid contribution 0.151 0.551 0.369 0.680 sum -1.701 10.353 -7.897 13.132 Atomic orbital electron populations 1.20424 0.81773 1.05470 1.04531 1.23783 0.96380 0.83615 1.06810 1.84389 1.18753 1.36321 1.70388 1.29017 0.86445 0.90899 0.99295 1.70210 1.23566 1.12068 1.18872 1.23020 0.88896 0.99706 1.07071 1.19862 0.97005 0.81561 0.94194 0.89051 1.58811 1.12544 1.58891 1.04451 1.18838 0.94490 0.94965 0.90383 1.21504 1.36609 0.99568 0.96874 0.91547 1.25992 0.96196 1.02882 0.95359 1.70138 1.46668 1.39066 1.02542 0.85408 0.78848 0.79274 0.77207 1.20391 1.21092 1.18400 0.89563 0.88042 0.88354 0.69014 0.85068 0.84968 1.00117 0.99402 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.17 71.24 0.72 -0.84 15 2 C -0.05 -1.68 7.39 24.80 0.18 -1.50 15 3 O -0.21 -6.16 10.78 -3.72 -0.04 -6.20 15 4 C 0.17 4.62 13.23 130.48 1.73 6.35 15 5 N -0.52 -19.15 11.18 -304.08 -3.40 -22.55 15 6 C -0.07 -2.55 5.92 41.26 0.24 -2.31 15 7 C 0.19 8.01 3.08 44.16 0.14 8.14 15 8 H 0.09 3.69 6.84 -2.39 -0.02 3.67 15 9 N -0.82 -32.90 8.94 -171.80 -1.54 -34.43 15 10 C 0.05 2.81 4.60 29.85 0.14 2.94 15 11 C -0.51 -29.56 8.84 25.60 0.23 -29.33 15 12 H 0.07 3.75 7.74 -2.91 -0.02 3.73 15 13 C -0.01 -0.49 5.46 84.65 0.46 -0.03 15 14 N -0.94 -59.49 13.29 21.45 0.28 -59.21 15 15 Si 0.97 45.86 29.54 68.60 2.03 47.88 15 16 H -0.28 -12.93 7.11 99.48 0.71 -12.23 15 17 H -0.29 -13.20 7.11 99.48 0.71 -12.49 15 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 15 19 H 0.09 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.10 1.80 8.14 -2.38 -0.02 1.78 15 21 H 0.10 2.23 7.04 -2.39 -0.02 2.22 15 22 H 0.29 4.19 8.06 -2.91 -0.02 4.17 15 23 H 0.34 11.25 9.06 -89.69 -0.81 10.43 15 24 H 0.34 14.14 8.89 -89.70 -0.80 13.35 15 25 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 15 26 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 15 Total: -1.00 -73.42 242.23 0.76 -72.66 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.42 Total: 18.42 kcal Atomic # 6 Polarization: -20.42 SS G_CDS: 3.84 Total: -16.58 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -4.65 Total: -116.19 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.04 Total: -6.20 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.42 0.76 -72.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260529806.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.719 kcal (2) G-P(sol) polarization free energy of solvation -73.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds