Wall clock time and date at job start Mon Mar 30 2020 02:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.16658 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46694 * 64.97679 * 5 4 3 7 7 N 1.46896 * 109.47682 * 184.97783 * 5 4 3 8 8 C 1.52995 * 109.47200 * 304.98282 * 5 4 3 9 9 C 1.50703 * 109.47125 * 174.99702 * 8 5 4 10 10 H 1.08004 * 120.00066 * 359.97438 * 9 8 5 11 11 C 1.37883 * 120.00045 * 179.97438 * 9 8 5 12 12 N 1.31513 * 119.99666 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99861 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47220 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47157 * 119.99888 * 13 11 9 16 16 H 1.48504 * 109.46897 * 240.00015 * 13 11 9 17 17 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 18 18 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 19 19 H 1.09003 * 109.47026 * 180.02562 * 1 2 3 20 20 H 1.09002 * 109.46910 * 299.99591 * 1 2 3 21 21 H 1.08997 * 109.47305 * 60.00061 * 1 2 3 22 22 H 1.00902 * 110.99818 * 296.05374 * 7 5 4 23 23 H 1.00902 * 110.99944 * 59.99842 * 7 5 4 24 24 H 1.09004 * 109.47318 * 294.99410 * 8 5 4 25 25 H 1.09001 * 109.47467 * 54.99821 * 8 5 4 26 26 H 0.97001 * 119.99475 * 180.02562 * 12 11 9 27 27 H 1.08001 * 126.44227 * 180.25944 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 4.7570 1.5727 -0.0002 6 1 4.7866 2.1378 0.9315 7 7 5.9773 0.7639 -0.1212 8 6 4.6678 2.5411 -1.1814 9 6 5.8070 3.5251 -1.1114 10 1 6.5229 3.4660 -0.3048 11 6 5.9355 4.5009 -2.0770 12 7 5.0635 4.5731 -3.0589 13 14 7.3480 5.7202 -1.9906 14 1 8.1833 5.4264 -0.7985 15 1 8.1779 5.6040 -3.2166 16 1 6.8061 7.0990 -1.8884 17 6 3.5698 -0.6756 -0.0015 18 8 2.2872 -1.0890 -0.0005 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 6.0926 0.1614 0.6799 23 1 5.9739 0.2301 -0.9775 24 1 4.7277 1.9818 -2.1151 25 1 3.7204 3.0785 -1.1399 26 1 5.1541 5.2594 -3.7384 27 1 4.4469 -1.3057 0.0018 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260592811.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:50 Heat of formation + Delta-G solvation = -15.253073 kcal Electronic energy + Delta-G solvation = -12064.870695 eV Core-core repulsion = 9822.912349 eV Total energy + Delta-G solvation = -2241.958346 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.29763 -37.78830 -35.37226 -34.54244 -32.45379 -30.38093 -28.31605 -26.52743 -23.72030 -22.35989 -21.20063 -18.67843 -18.01736 -17.73639 -16.90503 -16.39856 -15.75880 -15.30824 -14.78614 -14.35280 -13.94500 -13.89864 -13.30576 -13.15343 -12.97393 -12.58923 -12.41338 -12.02979 -11.49942 -11.31682 -11.20769 -10.53244 -9.74556 -9.61731 -8.12698 -6.20110 0.48338 1.42568 1.43215 1.57470 1.68699 1.84012 2.46909 3.12223 3.20530 3.68828 3.91405 4.07955 4.48406 4.55399 4.62407 4.64006 4.90187 4.94664 5.07908 5.35932 5.48304 5.62752 5.85069 6.21727 6.38842 6.75710 6.83509 6.94768 7.46743 9.00308 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.059324 B = 0.008459 C = 0.007691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.869758 B = 3309.334732 C = 3639.750240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.181 3.819 3 N -0.520 5.520 4 C -0.055 4.055 5 C 0.186 3.814 6 H 0.073 0.927 7 N -0.819 5.819 8 C 0.051 3.949 9 C -0.508 4.508 10 H 0.065 0.935 11 C -0.009 4.009 12 N -0.942 5.942 13 Si 0.968 3.032 14 H -0.261 1.261 15 H -0.280 1.280 16 H -0.282 1.282 17 C -0.084 4.084 18 O -0.207 6.207 19 H 0.115 0.885 20 H 0.109 0.891 21 H 0.101 0.899 22 H 0.347 0.653 23 H 0.343 0.657 24 H -0.017 1.017 25 H -0.010 1.010 26 H 0.260 0.740 27 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.659 -12.059 6.763 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.026 4.026 3 N -0.251 5.251 4 C -0.176 4.176 5 C 0.073 3.927 6 H 0.091 0.909 7 N -0.349 5.349 8 C 0.014 3.986 9 C -0.546 4.546 10 H 0.083 0.917 11 C -0.204 4.204 12 N -0.584 5.584 13 Si 0.793 3.207 14 H -0.185 1.185 15 H -0.206 1.206 16 H -0.208 1.208 17 C -0.154 4.154 18 O -0.095 6.095 19 H 0.134 0.866 20 H 0.128 0.872 21 H 0.119 0.881 22 H 0.161 0.839 23 H 0.157 0.843 24 H 0.001 0.999 25 H 0.008 0.992 26 H 0.069 0.931 27 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -5.532 -10.701 6.635 13.752 hybrid contribution 0.235 -0.594 -0.378 0.742 sum -5.297 -11.295 6.257 13.956 Atomic orbital electron populations 1.20503 0.77924 1.06536 1.05919 1.27460 0.98299 0.78103 0.98737 1.70334 1.02916 1.32088 1.19747 1.23406 0.94459 0.94732 1.05026 1.19640 0.81774 0.91537 0.99735 0.90865 1.58689 1.36908 1.31631 1.07639 1.18811 0.95440 0.92945 0.91425 1.21546 1.10758 1.12570 1.09706 0.91672 1.25990 0.99183 1.00058 0.95215 1.70144 1.38122 1.35600 1.14558 0.85356 0.78952 0.78164 0.78262 1.18516 1.20595 1.20772 1.25049 0.85726 0.95337 1.09247 1.84400 1.16939 1.37686 1.70436 0.86647 0.87224 0.88075 0.83881 0.84301 0.99850 0.99188 0.93146 0.73902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.96 10.51 71.24 0.75 -0.21 15 2 C 0.18 5.65 8.34 88.34 0.74 6.39 15 3 N -0.52 -21.18 11.25 -291.98 -3.29 -24.47 15 4 C -0.05 -2.15 6.31 41.26 0.26 -1.89 15 5 C 0.19 8.10 3.24 44.17 0.14 8.24 15 6 H 0.07 3.33 8.14 -2.38 -0.02 3.31 15 7 N -0.82 -28.99 8.40 -171.81 -1.44 -30.44 15 8 C 0.05 2.88 4.60 29.85 0.14 3.02 15 9 C -0.51 -30.05 8.84 25.60 0.23 -29.82 15 10 H 0.07 3.75 7.74 -2.91 -0.02 3.73 15 11 C -0.01 -0.51 5.46 84.66 0.46 -0.05 15 12 N -0.94 -60.15 13.29 21.45 0.28 -59.87 15 13 Si 0.97 46.44 29.54 68.60 2.03 48.47 15 14 H -0.26 -11.95 7.11 99.48 0.71 -11.25 15 15 H -0.28 -13.07 7.11 99.48 0.71 -12.37 15 16 H -0.28 -13.21 7.11 99.48 0.71 -12.50 15 17 C -0.08 -2.53 11.19 66.93 0.75 -1.78 15 18 O -0.21 -6.19 10.78 -3.73 -0.04 -6.23 15 19 H 0.11 1.38 8.14 -2.39 -0.02 1.36 15 20 H 0.11 1.72 8.14 -2.39 -0.02 1.70 15 21 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.35 9.31 8.67 -89.69 -0.78 8.54 15 23 H 0.34 11.48 8.75 -89.69 -0.79 10.69 15 24 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 15 25 H -0.01 -0.65 8.11 -2.39 -0.02 -0.67 15 26 H 0.26 15.55 8.31 -92.71 -0.77 14.78 15 27 H 0.25 5.04 7.61 -2.91 -0.02 5.01 15 Total: -1.00 -76.19 242.95 0.63 -75.56 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -0.37 Total: 13.08 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.46 Total: -16.11 kcal Atomic # 7 Polarization: -110.33 SS G_CDS: -4.44 Total: -114.77 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.04 Total: -6.23 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -76.19 0.63 -75.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260592811.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.305 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds