Wall clock time and date at job start Mon Mar 30 2020 02:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48501 * 109.47188 * 90.00793 * 9 7 5 11 11 H 1.48501 * 109.47085 * 210.00372 * 9 7 5 12 12 H 1.48498 * 109.47634 * 330.00608 * 9 7 5 13 13 C 1.50700 * 109.47313 * 65.00349 * 3 2 1 14 14 N 1.29948 * 126.28742 * 60.01895 * 13 3 2 15 15 O 1.21296 * 110.25250 * 179.97438 * 14 13 3 16 16 C 1.33646 * 109.80878 * 359.97438 * 15 14 13 17 17 C 1.50702 * 126.54935 * 179.97438 * 16 15 14 18 18 N 1.31130 * 106.89850 * 359.76943 * 16 15 14 19 19 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 20 20 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 21 21 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 22 22 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 23 23 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 1.09000 * 109.46748 * 359.97438 * 17 16 15 26 26 H 1.08998 * 109.47008 * 119.97972 * 17 16 15 27 27 H 1.08993 * 109.46961 * 239.98133 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5494 -0.3632 -0.7494 11 1 6.3866 0.9048 -2.8100 12 1 6.5606 2.0609 -0.6854 13 6 1.6414 2.1163 1.2877 14 7 1.9793 1.7453 2.4864 15 8 1.4982 2.4955 3.3093 16 6 0.7866 3.4454 2.6950 17 6 0.0302 4.5688 3.3559 18 7 0.8760 3.2157 1.4070 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3633 0.5138 -0.8899 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.8295 -0.0694 -2.9455 25 1 0.1463 4.4980 4.4374 26 1 0.4237 5.5246 3.0099 27 1 -1.0264 4.4962 3.0984 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260610301.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:32 Heat of formation + Delta-G solvation = 49.262729 kcal Electronic energy + Delta-G solvation = -12416.286459 eV Core-core repulsion = 10177.125729 eV Total energy + Delta-G solvation = -2239.160730 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.73214 -35.99670 -34.34086 -32.51401 -31.39628 -28.42904 -27.56364 -23.95858 -22.68414 -21.75984 -19.28676 -17.43146 -16.66781 -16.26187 -14.77439 -14.25944 -13.69392 -13.23827 -13.00300 -12.95775 -12.32429 -11.78433 -11.35353 -11.29059 -11.01367 -10.85742 -10.59669 -10.30157 -10.06137 -9.90139 -9.69753 -9.28694 -8.71199 -8.41978 -6.09423 -4.16195 1.92353 3.21122 3.29021 3.34925 3.40312 3.51259 4.34507 4.50611 5.17078 5.22429 5.41862 5.43630 5.62626 6.03045 6.19024 6.23717 6.44137 6.62479 6.81934 6.92335 7.13487 7.20704 7.60272 7.80867 7.95752 8.22538 8.83061 9.12697 9.47645 10.96675 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.043052 B = 0.011397 C = 0.009852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.224160 B = 2456.145901 C = 2841.520440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.129 3.871 4 H 0.057 0.943 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.219 3.781 14 N -0.390 5.390 15 O 0.056 5.944 16 C 0.138 3.862 17 C -0.051 4.051 18 N -0.487 5.487 19 H 0.038 0.962 20 H 0.027 0.973 21 H 0.048 0.952 22 H 0.106 0.894 23 H 0.039 0.961 24 H 0.264 0.736 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.731 4.786 7.470 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.109 3.891 4 H 0.075 0.925 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.728 3.272 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 C -0.053 4.053 14 N -0.100 5.100 15 O 0.001 5.999 16 C -0.083 4.083 17 C -0.110 4.110 18 N -0.222 5.222 19 H 0.057 0.943 20 H 0.046 0.954 21 H 0.068 0.932 22 H 0.124 0.876 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.113 0.887 27 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.288 4.087 7.051 9.715 hybrid contribution 0.915 0.109 0.016 0.921 sum -4.373 4.196 7.067 9.310 Atomic orbital electron populations 1.21824 0.99015 0.99416 0.99931 1.21628 0.91811 0.98449 1.03379 1.17477 0.96428 0.91413 0.83795 0.92496 1.20954 0.89676 1.38424 1.05910 0.92519 1.24899 0.98661 0.94822 0.95280 1.69861 1.35078 1.38042 1.09544 0.86444 0.84920 0.78585 0.77234 1.20454 1.20977 1.19908 1.26861 0.91567 0.90046 0.96800 1.74595 1.19445 1.14643 1.01338 1.85262 1.48684 1.30509 1.35419 1.28698 0.96178 0.95031 0.88404 1.20171 0.98820 0.91770 1.00226 1.71915 1.19410 1.15829 1.15040 0.94323 0.95375 0.93246 0.87591 0.94174 0.92613 0.89347 0.88686 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.73 37.16 0.36 -2.70 15 2 C -0.11 -2.83 5.23 -26.73 -0.14 -2.97 15 3 C 0.13 3.42 2.25 -92.92 -0.21 3.22 15 4 H 0.06 1.61 8.14 -51.93 -0.42 1.19 15 5 C -0.51 -14.59 8.55 -34.44 -0.29 -14.89 15 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 15 8 N -0.89 -25.07 11.28 55.43 0.63 -24.44 15 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 15 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 13 C 0.22 5.35 5.64 -156.37 -0.88 4.47 15 14 N -0.39 -9.19 12.16 30.90 0.38 -8.81 15 15 O 0.06 1.10 11.31 18.09 0.20 1.30 15 16 C 0.14 2.40 8.51 -13.06 -0.11 2.29 15 17 C -0.05 -0.52 10.51 36.01 0.38 -0.14 15 18 N -0.49 -10.58 11.55 -9.87 -0.11 -10.70 15 19 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 20 H 0.03 0.58 7.38 -51.93 -0.38 0.20 15 21 H 0.05 1.03 8.14 -51.93 -0.42 0.60 15 22 H 0.11 2.83 5.94 -51.93 -0.31 2.53 15 23 H 0.04 1.01 8.14 -51.93 -0.42 0.59 15 24 H 0.26 7.06 8.31 -40.82 -0.34 6.72 15 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 15 26 H 0.09 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 239.22 15.07 3.61 3.61 Total: -1.00 -31.19 239.22 -4.51 -35.70 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -3.19 Total: -4.26 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -0.99 Total: -8.99 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.89 Total: -43.95 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.19 -4.51 -35.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610301.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.958 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds