Wall clock time and date at job start Mon Mar 30 2020 02:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47339 * 2 1 4 4 H 1.08999 * 109.47248 * 305.60563 * 3 2 1 5 5 C 1.50706 * 109.46991 * 65.60205 * 3 2 1 6 6 H 1.07998 * 120.00054 * 27.79516 * 5 3 2 7 7 C 1.37872 * 119.99790 * 207.79515 * 5 3 2 8 8 N 1.31515 * 120.00522 * 6.03439 * 7 5 3 9 9 Si 1.86804 * 119.99904 * 186.03842 * 7 5 3 10 10 H 1.48496 * 109.47229 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47123 * 120.00125 * 9 7 5 12 12 H 1.48503 * 109.46740 * 239.99750 * 9 7 5 13 13 C 1.50704 * 109.47434 * 185.59923 * 3 2 1 14 14 N 1.29946 * 126.28441 * 299.69287 * 13 3 2 15 15 O 1.21301 * 110.24697 * 179.83962 * 14 13 3 16 16 C 1.33648 * 109.81174 * 0.42189 * 15 14 13 17 17 C 1.50701 * 126.54977 * 179.71338 * 16 15 14 18 18 N 1.31125 * 106.89541 * 359.74287 * 16 15 14 19 19 H 1.08998 * 109.46891 * 293.99358 * 1 2 3 20 20 H 1.08995 * 109.46865 * 53.99126 * 1 2 3 21 21 H 1.08998 * 109.47219 * 173.99857 * 1 2 3 22 22 H 1.09006 * 109.47035 * 239.99924 * 2 1 3 23 23 H 1.09004 * 109.47292 * 120.00305 * 2 1 3 24 24 H 0.96995 * 120.00663 * 179.97438 * 8 7 5 25 25 H 1.08995 * 109.47066 * 270.02756 * 17 16 15 26 26 H 1.08995 * 109.47054 * 30.03300 * 17 16 15 27 27 H 1.09001 * 109.46498 * 150.02657 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5971 1.9844 -0.8355 5 6 1.6541 2.1117 1.2940 6 1 1.5229 1.5216 2.1889 7 6 1.4687 3.4772 1.3352 8 7 1.5114 4.1806 0.2248 9 14 1.1568 4.3285 2.9685 10 1 1.1561 3.3212 4.0596 11 1 2.2262 5.3283 3.2178 12 1 -0.1604 5.0129 2.9263 13 6 3.5407 1.4447 -0.1386 14 7 4.3894 0.8977 0.6793 15 8 5.5235 1.0721 0.2861 16 6 5.5059 1.7760 -0.8498 17 6 6.7033 2.2092 -1.6559 18 7 4.2477 2.0182 -1.1286 19 1 -0.3633 0.4179 0.9389 20 1 -0.3633 0.6042 -0.8313 21 1 -0.3633 -1.0220 -0.1074 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.3805 5.1412 0.2537 25 1 7.0401 3.1863 -1.3098 26 1 7.5066 1.4830 -1.5320 27 1 6.4290 2.2714 -2.7090 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260610304.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:35 Heat of formation + Delta-G solvation = 46.431988 kcal Electronic energy + Delta-G solvation = -12433.485494 eV Core-core repulsion = 10194.202013 eV Total energy + Delta-G solvation = -2239.283481 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.45230 -35.80121 -34.16129 -32.27251 -31.78948 -28.22546 -27.20931 -24.24777 -22.51276 -21.40816 -19.38146 -17.12711 -16.54806 -16.37097 -14.57224 -14.09155 -13.55255 -13.38426 -13.06585 -12.67815 -12.53781 -11.62229 -11.25057 -11.12020 -11.00172 -10.78237 -10.48061 -10.32889 -10.11976 -9.98485 -9.44537 -9.19306 -8.57412 -8.56468 -6.12158 -4.18057 2.15626 3.24183 3.33381 3.38603 3.53003 3.73236 4.36621 4.66777 5.16036 5.50468 5.56579 5.61252 5.80281 6.07802 6.11223 6.25977 6.41724 6.70978 6.89629 6.97768 7.05925 7.17085 7.37341 7.66001 7.82693 8.20768 8.91070 9.36582 9.48039 10.95411 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.014125 C = 0.011217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.369378 B = 1981.766248 C = 2495.694740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 C 0.113 3.887 4 H 0.082 0.918 5 C -0.508 4.508 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.874 5.874 9 Si 0.892 3.108 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.224 3.776 14 N -0.402 5.402 15 O 0.048 5.952 16 C 0.130 3.870 17 C -0.050 4.050 18 N -0.475 5.475 19 H 0.063 0.937 20 H 0.049 0.951 21 H 0.032 0.968 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.263 0.737 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.021 -3.707 -2.928 7.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.142 4.142 3 C 0.093 3.907 4 H 0.100 0.900 5 C -0.547 4.547 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.510 5.510 9 Si 0.719 3.281 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.207 1.207 13 C -0.048 4.048 14 N -0.114 5.114 15 O -0.005 6.005 16 C -0.091 4.091 17 C -0.108 4.108 18 N -0.210 5.210 19 H 0.082 0.918 20 H 0.068 0.932 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.460 -3.781 -2.521 7.104 hybrid contribution 0.159 0.813 0.859 1.193 sum 5.619 -2.968 -1.662 6.568 Atomic orbital electron populations 1.21564 0.95808 0.98850 1.02648 1.21461 0.96041 0.97457 0.99267 1.17592 0.79441 0.93005 1.00703 0.89963 1.20953 1.47111 0.92107 0.94524 0.91920 1.25088 0.94389 0.97758 0.96506 1.69979 1.47826 1.07022 1.26126 0.86531 0.77824 0.79639 0.84112 1.19438 1.20999 1.20692 1.27329 1.02174 0.90719 0.84587 1.74511 0.89430 1.25079 1.22407 1.85208 1.26055 1.55163 1.34065 1.28673 0.96500 0.95210 0.88738 1.20125 0.90266 1.02191 0.98253 1.71966 1.00751 1.21487 1.26769 0.91843 0.93226 0.94852 0.94900 0.93059 0.92710 0.89188 0.89577 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.63 37.16 0.36 -2.24 15 2 C -0.10 -2.30 5.37 -26.73 -0.14 -2.44 15 3 C 0.11 2.95 2.29 -92.92 -0.21 2.73 15 4 H 0.08 2.34 7.44 -51.93 -0.39 1.95 15 5 C -0.51 -14.17 7.41 -34.44 -0.26 -14.42 15 6 H 0.06 1.75 7.82 -52.49 -0.41 1.34 15 7 C 0.07 1.89 5.45 -17.82 -0.10 1.79 15 8 N -0.87 -25.52 12.87 55.43 0.71 -24.81 15 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 15 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 15 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 15 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 15 13 C 0.22 5.75 6.71 -156.37 -1.05 4.71 15 14 N -0.40 -9.92 12.16 30.90 0.38 -9.54 15 15 O 0.05 1.02 11.31 18.09 0.20 1.22 15 16 C 0.13 2.53 8.51 -13.06 -0.11 2.42 15 17 C -0.05 -0.60 10.51 36.01 0.38 -0.22 15 18 N -0.47 -11.37 11.55 -9.87 -0.11 -11.48 15 19 H 0.06 1.31 7.60 -51.93 -0.39 0.91 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.03 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.05 1.15 8.14 -51.93 -0.42 0.72 15 24 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 25 H 0.09 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 15 LS Contribution 242.79 15.07 3.66 3.66 Total: -1.00 -31.93 242.79 -4.60 -36.53 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: -3.29 Total: -4.58 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.13 Total: -7.68 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.98 Total: -45.83 kcal Atomic # 8 Polarization: 1.02 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.93 -4.60 -36.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610304.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.963 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds