Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47339 * 2 1 4 4 H 1.08999 * 109.47248 * 305.60563 * 3 2 1 5 5 C 1.50706 * 109.46991 * 65.60205 * 3 2 1 6 6 H 1.07998 * 120.00054 * 27.79516 * 5 3 2 7 7 C 1.37872 * 119.99790 * 207.79515 * 5 3 2 8 8 N 1.31515 * 120.00522 * 6.03439 * 7 5 3 9 9 Si 1.86804 * 119.99904 * 186.03842 * 7 5 3 10 10 H 1.48496 * 109.47229 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47123 * 120.00125 * 9 7 5 12 12 H 1.48503 * 109.46740 * 239.99750 * 9 7 5 13 13 C 1.50704 * 109.47434 * 185.59923 * 3 2 1 14 14 N 1.29946 * 126.28441 * 299.69287 * 13 3 2 15 15 O 1.21301 * 110.24697 * 179.83962 * 14 13 3 16 16 C 1.33648 * 109.81174 * 0.42189 * 15 14 13 17 17 C 1.50701 * 126.54977 * 179.71338 * 16 15 14 18 18 N 1.31125 * 106.89541 * 359.74287 * 16 15 14 19 19 H 1.08998 * 109.46891 * 293.99358 * 1 2 3 20 20 H 1.08995 * 109.46865 * 53.99126 * 1 2 3 21 21 H 1.08998 * 109.47219 * 173.99857 * 1 2 3 22 22 H 1.09006 * 109.47035 * 239.99924 * 2 1 3 23 23 H 1.09004 * 109.47292 * 120.00305 * 2 1 3 24 24 H 0.96995 * 120.00663 * 179.97438 * 8 7 5 25 25 H 1.08995 * 109.47066 * 270.02756 * 17 16 15 26 26 H 1.08995 * 109.47054 * 30.03300 * 17 16 15 27 27 H 1.09001 * 109.46498 * 150.02657 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5971 1.9844 -0.8355 5 6 1.6541 2.1117 1.2940 6 1 1.5229 1.5216 2.1889 7 6 1.4687 3.4772 1.3352 8 7 1.5114 4.1806 0.2248 9 14 1.1568 4.3285 2.9685 10 1 1.1561 3.3212 4.0596 11 1 2.2262 5.3283 3.2178 12 1 -0.1604 5.0129 2.9263 13 6 3.5407 1.4447 -0.1386 14 7 4.3894 0.8977 0.6793 15 8 5.5235 1.0721 0.2861 16 6 5.5059 1.7760 -0.8498 17 6 6.7033 2.2092 -1.6559 18 7 4.2477 2.0182 -1.1286 19 1 -0.3633 0.4179 0.9389 20 1 -0.3633 0.6042 -0.8313 21 1 -0.3633 -1.0220 -0.1074 22 1 1.8933 -0.5139 -0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.3805 5.1412 0.2537 25 1 7.0401 3.1863 -1.3098 26 1 7.5066 1.4830 -1.5320 27 1 6.4290 2.2714 -2.7090 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260610304.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = 23.756501 kcal Electronic energy + Delta-G solvation = -12434.468777 eV Core-core repulsion = 10194.202013 eV Total energy + Delta-G solvation = -2240.266763 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.23240 -37.67848 -35.91437 -34.12901 -33.56071 -29.64545 -29.04676 -26.29007 -24.28719 -23.08076 -21.22314 -18.90918 -18.54375 -18.19758 -16.59122 -15.67226 -15.35260 -15.06874 -14.52085 -14.07138 -13.80096 -13.48923 -13.12561 -12.89728 -12.74143 -12.53692 -12.33007 -12.11232 -11.95455 -11.77014 -11.28748 -11.19589 -10.70052 -10.37118 -8.24603 -6.36806 0.53132 1.32006 1.34924 1.47254 1.67978 2.28261 2.34478 2.94626 3.29474 3.66850 4.27850 4.37889 4.53294 4.61117 4.68514 4.75494 4.99929 5.10708 5.14387 5.22191 5.28217 5.47553 5.54885 5.62740 5.74248 6.12777 6.76072 7.30671 7.64652 8.83228 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.030316 B = 0.014125 C = 0.011217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.369378 B = 1981.766248 C = 2495.694740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 C 0.111 3.889 4 H 0.049 0.951 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.906 5.906 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.200 3.800 14 N -0.423 5.423 15 O 0.055 5.945 16 C 0.153 3.847 17 C -0.049 4.049 18 N -0.519 5.519 19 H 0.050 0.950 20 H 0.043 0.957 21 H 0.069 0.931 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.264 0.736 25 H 0.111 0.889 26 H 0.125 0.875 27 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.173 -3.928 -2.824 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.137 4.137 3 C 0.091 3.909 4 H 0.067 0.933 5 C -0.556 4.556 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.543 5.543 9 Si 0.778 3.222 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.195 1.195 13 C -0.072 4.072 14 N -0.135 5.135 15 O 0.001 5.999 16 C -0.068 4.068 17 C -0.107 4.107 18 N -0.254 5.254 19 H 0.069 0.931 20 H 0.062 0.938 21 H 0.088 0.912 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.129 0.871 26 H 0.144 0.856 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.603 -4.010 -2.424 8.096 hybrid contribution -0.066 0.849 0.748 1.133 sum 6.536 -3.160 -1.677 7.451 Atomic orbital electron populations 1.21505 0.94038 1.00943 1.01698 1.21406 0.97583 0.95184 0.99482 1.17467 0.80272 0.94594 0.98589 0.93263 1.21131 1.47064 0.92505 0.94922 0.92670 1.25830 0.94370 0.98403 0.99644 1.70097 1.49084 1.07186 1.27952 0.85582 0.78006 0.78469 0.80178 1.19016 1.21071 1.19460 1.27165 1.02237 0.92051 0.85743 1.74456 0.90263 1.25845 1.22979 1.85151 1.24570 1.55382 1.34769 1.30016 0.97232 0.92090 0.87425 1.20618 0.88219 1.04113 0.97736 1.71928 1.02721 1.23274 1.27436 0.93119 0.93778 0.91220 0.93823 0.93483 0.92676 0.87085 0.85613 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.63 71.98 0.69 -4.17 15 2 C -0.10 -4.37 5.37 30.59 0.16 -4.20 15 3 C 0.11 5.94 2.29 -12.28 -0.03 5.91 15 4 H 0.05 2.91 7.44 -2.39 -0.02 2.90 15 5 C -0.52 -29.35 7.41 25.60 0.19 -29.16 15 6 H 0.06 3.13 7.82 -2.91 -0.02 3.11 15 7 C 0.02 1.06 5.45 84.65 0.46 1.53 15 8 N -0.91 -53.93 12.87 21.45 0.28 -53.66 15 9 Si 0.95 44.78 29.54 68.60 2.03 46.81 15 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 11 H -0.28 -13.32 7.11 99.48 0.71 -12.61 15 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 15 13 C 0.20 10.40 6.71 138.46 0.93 11.33 15 14 N -0.42 -20.82 12.16 -60.32 -0.73 -21.55 15 15 O 0.06 2.28 11.31 74.79 0.85 3.13 15 16 C 0.15 5.66 8.51 88.38 0.75 6.41 15 17 C -0.05 -0.99 10.51 71.24 0.75 -0.24 15 18 N -0.52 -24.81 11.55 -303.21 -3.50 -28.32 15 19 H 0.05 2.08 7.60 -2.39 -0.02 2.06 15 20 H 0.04 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 22 H 0.04 1.81 8.14 -2.38 -0.02 1.79 15 23 H 0.05 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.26 14.86 8.31 -92.71 -0.77 14.09 15 25 H 0.11 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.13 1.62 8.14 -2.39 -0.02 1.60 15 27 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15 Total: -1.00 -70.25 242.79 3.98 -66.27 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: 1.16 Total: -0.08 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 3.91 Total: -12.60 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -3.96 Total: -103.52 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.85 Total: 3.13 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.25 3.98 -66.27 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260610304.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.027 kcal (2) G-P(sol) polarization free energy of solvation -70.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds