Wall clock time and date at job start Mon Mar 30 2020 02:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34327 * 126.16365 * 2 1 4 4 O 1.34754 * 107.11189 * 179.97438 * 3 2 1 5 5 C 1.33964 * 107.75643 * 359.97438 * 4 3 2 6 6 C 1.50702 * 125.62261 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47041 * 165.02601 * 6 5 4 8 8 N 1.46904 * 109.46735 * 45.02854 * 6 5 4 9 9 C 1.52994 * 109.47262 * 285.02818 * 6 5 4 10 10 C 1.50701 * 109.46955 * 184.99693 * 9 6 5 11 11 H 1.07998 * 120.00468 * 0.02562 * 10 9 6 12 12 C 1.37879 * 119.99674 * 179.97438 * 10 9 6 13 13 N 1.31512 * 120.00437 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99788 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.46744 * 60.00367 * 14 12 10 16 16 H 1.48497 * 109.46796 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47287 * 300.00247 * 14 12 10 18 18 N 1.30258 * 108.75916 * 0.02562 * 5 4 3 19 19 H 1.09000 * 109.47389 * 90.01830 * 1 2 3 20 20 H 1.08993 * 109.47088 * 210.02312 * 1 2 3 21 21 H 1.09004 * 109.47015 * 330.02062 * 1 2 3 22 22 H 1.08001 * 126.44654 * 359.95053 * 3 2 1 23 23 H 1.00900 * 110.99931 * 176.04130 * 8 6 5 24 24 H 1.00897 * 110.99887 * 299.99734 * 8 6 5 25 25 H 1.08997 * 109.47115 * 304.99704 * 9 6 5 26 26 H 1.08997 * 109.46993 * 64.99987 * 9 6 5 27 27 H 0.97002 * 120.00422 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0845 0.0000 4 8 3.5734 0.6446 0.0006 5 6 3.5431 -0.6947 0.0015 6 6 4.7480 -1.5999 0.0018 7 1 4.4422 -2.6117 0.2681 8 7 5.7276 -1.1107 0.9811 9 6 5.3801 -1.6082 -1.3914 10 6 6.5093 -2.6056 -1.4247 11 1 6.7516 -3.1768 -0.5408 12 6 7.2324 -2.7896 -2.5842 13 7 6.9371 -2.0945 -3.6608 14 14 8.6327 -4.0254 -2.6253 15 1 8.1079 -5.3786 -2.3112 16 1 9.2461 -4.0335 -3.9777 17 1 9.6574 -3.6461 -1.6198 18 7 2.3006 -1.0856 0.0009 19 1 -0.3634 -0.0003 -1.0276 20 1 -0.3633 -0.8897 0.5142 21 1 -0.3633 0.8902 0.5135 22 1 1.9769 2.1151 -0.0008 23 1 6.5165 -1.7364 1.0470 24 1 6.0269 -0.1738 0.7561 25 1 4.6281 -1.8859 -2.1299 26 1 5.7657 -0.6150 -1.6213 27 1 7.4461 -2.2237 -4.4764 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622649.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:18 Heat of formation + Delta-G solvation = -20.343614 kcal Electronic energy + Delta-G solvation = -12065.187350 eV Core-core repulsion = 9823.008262 eV Total energy + Delta-G solvation = -2242.179088 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.25503 -37.50877 -36.09129 -34.56936 -32.26032 -30.07867 -28.35723 -26.57013 -23.94352 -22.53379 -21.20985 -18.91270 -17.92712 -17.59523 -16.71709 -16.56084 -15.86405 -14.97760 -14.55946 -14.42655 -14.11661 -14.02263 -13.63473 -13.01007 -12.88263 -12.68867 -12.40467 -12.09942 -11.81116 -11.52832 -11.40809 -10.64468 -9.85878 -9.46963 -8.25708 -6.39505 0.54117 1.42420 1.45265 1.52844 1.69024 1.90683 2.38726 2.99228 3.09187 3.87249 3.94824 4.07325 4.35756 4.51357 4.69548 4.80353 4.89112 5.02546 5.07463 5.24393 5.36445 5.45891 5.66895 6.03746 6.11179 6.55569 6.74559 6.83626 7.31356 8.86263 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066175 B = 0.008064 C = 0.007800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.018603 B = 3471.193653 C = 3588.952611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.044 4.044 3 C -0.088 4.088 4 O -0.211 6.211 5 C 0.206 3.794 6 C 0.197 3.803 7 H 0.105 0.895 8 N -0.824 5.824 9 C 0.011 3.989 10 C -0.540 4.540 11 H 0.076 0.924 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.972 3.028 15 H -0.267 1.267 16 H -0.288 1.288 17 H -0.260 1.260 18 N -0.519 5.519 19 H 0.080 0.920 20 H 0.069 0.931 21 H 0.106 0.894 22 H 0.258 0.742 23 H 0.361 0.639 24 H 0.341 0.659 25 H -0.013 1.013 26 H -0.002 1.002 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 5.371 7.141 11.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.163 4.163 3 C -0.157 4.157 4 O -0.097 6.097 5 C -0.001 4.001 6 C 0.084 3.916 7 H 0.123 0.877 8 N -0.355 5.355 9 C -0.029 4.029 10 C -0.577 4.577 11 H 0.094 0.906 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.796 3.204 15 H -0.192 1.192 16 H -0.214 1.214 17 H -0.185 1.185 18 N -0.251 5.251 19 H 0.099 0.901 20 H 0.088 0.912 21 H 0.124 0.876 22 H 0.274 0.726 23 H 0.177 0.823 24 H 0.153 0.847 25 H 0.005 0.995 26 H 0.016 0.984 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.138 4.707 7.522 12.040 hybrid contribution 1.456 0.243 -1.418 2.047 sum -6.682 4.950 6.104 10.316 Atomic orbital electron populations 1.20200 0.83720 1.04481 1.03621 1.22591 1.00046 0.87888 1.05807 1.25645 0.79266 1.02579 1.08230 1.84422 1.32067 1.23823 1.69365 1.26574 0.95460 0.79538 0.98535 1.19788 0.85135 0.93503 0.93181 0.87696 1.59093 1.19401 1.08024 1.49023 1.19669 0.95165 0.96544 0.91515 1.21415 1.15519 1.22576 0.98225 0.90571 1.26000 1.00418 0.98017 0.95033 1.70113 1.42057 1.42491 1.02510 0.85391 0.78660 0.79026 0.77320 1.19200 1.21385 1.18490 1.70304 1.01055 1.33165 1.20533 0.90102 0.91190 0.87554 0.72598 0.82322 0.84696 0.99451 0.98353 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.35 10.43 71.24 0.74 -0.61 15 2 C -0.04 -1.42 7.11 41.26 0.29 -1.13 15 3 C -0.09 -2.58 12.08 66.93 0.81 -1.78 15 4 O -0.21 -8.09 10.71 -3.73 -0.04 -8.13 15 5 C 0.21 8.77 7.15 88.34 0.63 9.40 15 6 C 0.20 8.60 3.30 44.17 0.15 8.75 15 7 H 0.11 4.64 8.14 -2.38 -0.02 4.62 15 8 N -0.82 -31.10 9.18 -171.79 -1.58 -32.67 15 9 C 0.01 0.56 4.60 29.85 0.14 0.69 15 10 C -0.54 -29.07 8.55 25.60 0.22 -28.85 15 11 H 0.08 3.78 7.15 -2.91 -0.02 3.76 15 12 C 0.00 0.22 5.46 84.66 0.46 0.68 15 13 N -0.93 -55.96 13.29 21.45 0.28 -55.68 15 14 Si 0.97 42.74 29.54 68.60 2.03 44.77 15 15 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 16 H -0.29 -12.64 7.11 99.48 0.71 -11.93 15 17 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 18 N -0.52 -21.49 11.29 -291.98 -3.30 -24.79 15 19 H 0.08 1.58 8.14 -2.39 -0.02 1.56 15 20 H 0.07 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.11 1.48 8.14 -2.38 -0.02 1.46 15 22 H 0.26 4.42 8.06 -2.91 -0.02 4.40 15 23 H 0.36 13.05 7.90 -89.69 -0.71 12.34 15 24 H 0.34 12.54 8.93 -89.70 -0.80 11.74 15 25 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 15 26 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 15 27 H 0.26 14.99 8.31 -92.71 -0.77 14.22 15 Total: -1.00 -67.79 243.21 0.52 -67.28 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: -0.32 Total: 22.07 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 3.44 Total: -12.83 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -4.59 Total: -113.14 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.04 Total: -8.13 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -67.79 0.52 -67.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622649.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.932 kcal (2) G-P(sol) polarization free energy of solvation -67.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds