Wall clock time and date at job start Mon Mar 30 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34324 * 126.17046 * 2 1 4 4 O 1.34745 * 107.11678 * 179.80766 * 3 2 1 5 5 C 1.33973 * 107.75736 * 0.36701 * 4 3 2 6 6 C 1.50697 * 125.62108 * 179.89696 * 5 4 3 7 7 H 1.09002 * 109.46822 * 194.68620 * 6 5 4 8 8 N 1.46904 * 109.47123 * 314.68488 * 6 5 4 9 9 C 1.53002 * 109.47354 * 74.68659 * 6 5 4 10 10 C 1.50696 * 109.46919 * 174.99865 * 9 6 5 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 6 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00183 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 299.99939 * 14 12 10 18 18 N 1.30258 * 108.75638 * 359.62558 * 5 4 3 19 19 H 1.08997 * 109.47569 * 269.95834 * 1 2 3 20 20 H 1.09001 * 109.46816 * 29.95889 * 1 2 3 21 21 H 1.09003 * 109.46964 * 149.95417 * 1 2 3 22 22 H 1.08005 * 126.43993 * 0.05899 * 3 2 1 23 23 H 1.00904 * 110.99623 * 60.00262 * 8 6 5 24 24 H 1.00900 * 111.00058 * 183.95379 * 8 6 5 25 25 H 1.09000 * 109.46497 * 55.00130 * 9 6 5 26 26 H 1.08999 * 109.46623 * 295.00194 * 9 6 5 27 27 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0843 0.0000 4 8 3.5734 0.6445 0.0043 5 6 3.5431 -0.6949 -0.0013 6 6 4.7479 -1.6001 -0.0014 7 1 4.4420 -2.6120 -0.2670 8 7 5.7274 -1.1115 -0.9812 9 6 5.3804 -1.6076 1.3918 10 6 6.5095 -2.6050 1.4254 11 1 6.7516 -3.1767 0.5417 12 6 7.2330 -2.7884 2.5848 13 7 6.9339 -2.0969 3.6627 14 14 8.6322 -4.0253 2.6267 15 1 9.6569 -3.6477 1.6204 16 1 9.2461 -4.0325 3.9789 17 1 8.1063 -5.3785 2.3141 18 7 2.3005 -1.0858 -0.0008 19 1 -0.3634 -0.0007 1.0276 20 1 -0.3633 0.8904 -0.5132 21 1 -0.3633 -0.8896 -0.5146 22 1 1.9769 2.1150 0.0009 23 1 6.0268 -0.1744 -0.7567 24 1 6.5163 -1.7371 -1.0467 25 1 4.6284 -1.8849 2.1305 26 1 5.7660 -0.6142 1.6210 27 1 6.2072 -1.4549 3.6411 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260622651.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:21 Heat of formation + Delta-G solvation = 0.948971 kcal Electronic energy + Delta-G solvation = -12098.205610 eV Core-core repulsion = 9856.949838 eV Total energy + Delta-G solvation = -2241.255772 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.91619 -35.92429 -34.77792 -32.72652 -31.02330 -27.97741 -27.06140 -24.60181 -22.27086 -21.19966 -19.83724 -17.19161 -16.68752 -16.15821 -15.31993 -14.58256 -13.84319 -13.58027 -13.38643 -13.18228 -12.87815 -12.46014 -12.03367 -11.64779 -11.16773 -10.79967 -10.65327 -10.39105 -10.15223 -10.14278 -8.81010 -8.54652 -8.43951 -8.00535 -6.50171 -4.22811 1.84893 3.02547 3.20162 3.38341 3.40129 3.58520 4.28218 4.47025 5.03619 5.14710 5.25745 5.40611 5.62321 5.64185 5.78669 6.07478 6.18039 6.26235 6.33197 6.64848 7.04566 7.13244 7.66013 7.88569 8.04577 8.18771 8.27682 8.70072 9.51096 10.90064 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066452 B = 0.008103 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.257921 B = 3454.718281 C = 3571.000707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.020 4.020 3 C -0.100 4.100 4 O -0.198 6.198 5 C 0.236 3.764 6 C 0.190 3.810 7 H 0.112 0.888 8 N -0.837 5.837 9 C -0.016 4.016 10 C -0.608 4.608 11 H 0.055 0.945 12 C 0.020 3.980 13 N -0.905 5.905 14 Si 1.072 2.928 15 H -0.286 1.286 16 H -0.282 1.282 17 H -0.286 1.286 18 N -0.495 5.495 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.073 0.927 22 H 0.208 0.792 23 H 0.337 0.663 24 H 0.359 0.641 25 H 0.017 0.983 26 H 0.013 0.987 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.359 4.956 -6.682 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C -0.171 4.171 4 O -0.084 6.084 5 C 0.028 3.972 6 C 0.078 3.922 7 H 0.129 0.871 8 N -0.368 5.368 9 C -0.055 4.055 10 C -0.646 4.646 11 H 0.073 0.927 12 C -0.185 4.185 13 N -0.540 5.540 14 Si 0.899 3.101 15 H -0.213 1.213 16 H -0.207 1.207 17 H -0.212 1.212 18 N -0.225 5.225 19 H 0.090 0.910 20 H 0.089 0.911 21 H 0.092 0.908 22 H 0.224 0.776 23 H 0.148 0.852 24 H 0.175 0.825 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.936 3.599 -6.242 10.002 hybrid contribution -0.516 1.590 -0.074 1.673 sum -7.453 5.189 -6.316 11.061 Atomic orbital electron populations 1.20042 0.86980 1.02892 1.02558 1.21784 0.97941 0.88615 1.05602 1.24597 0.80838 1.00625 1.11037 1.84440 1.30111 1.24493 1.69397 1.26893 0.95522 0.78803 0.95971 1.20040 0.84298 0.93173 0.94727 0.87057 1.59105 1.19665 1.07789 1.50223 1.19995 0.96510 0.97937 0.91065 1.21857 1.17475 1.24780 1.00507 0.92659 1.25902 1.00998 0.99535 0.92092 1.70783 1.29979 1.23583 1.29649 0.83500 0.75183 0.75245 0.76160 1.21274 1.20734 1.21235 1.70349 1.00591 1.31102 1.20491 0.91003 0.91096 0.90817 0.77569 0.85198 0.82550 0.96498 0.96829 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.43 36.00 0.38 -0.43 15 2 C -0.02 -0.33 7.11 -82.81 -0.59 -0.92 15 3 C -0.10 -1.58 12.08 29.35 0.35 -1.22 15 4 O -0.20 -3.84 10.72 5.37 0.06 -3.78 15 5 C 0.24 4.96 7.15 -12.95 -0.09 4.86 15 6 C 0.19 4.11 3.30 -68.86 -0.23 3.88 15 7 H 0.11 2.45 8.14 -51.93 -0.42 2.03 15 8 N -0.84 -16.07 9.18 -5.65 -0.05 -16.12 15 9 C -0.02 -0.40 3.92 -27.88 -0.11 -0.51 15 10 C -0.61 -16.44 8.55 -34.44 -0.29 -16.73 15 11 H 0.06 1.43 7.15 -52.49 -0.38 1.05 15 12 C 0.02 0.55 5.46 -17.82 -0.10 0.46 15 13 N -0.90 -27.31 13.65 55.43 0.76 -26.56 15 14 Si 1.07 24.49 29.90 -169.99 -5.08 19.41 15 15 H -0.29 -6.18 7.11 56.52 0.40 -5.77 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 15 17 H -0.29 -6.27 7.11 56.52 0.40 -5.86 15 18 N -0.50 -10.22 11.29 -7.36 -0.08 -10.30 15 19 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.07 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 22 H 0.21 2.20 8.06 -52.48 -0.42 1.78 15 23 H 0.34 6.27 8.94 -39.29 -0.35 5.92 15 24 H 0.36 6.75 7.90 -39.29 -0.31 6.44 15 25 H 0.02 0.46 8.00 -51.93 -0.42 0.05 15 26 H 0.01 0.36 8.01 -51.93 -0.42 -0.06 15 27 H 0.27 8.18 7.22 -40.82 -0.29 7.89 15 LS Contribution 241.91 15.07 3.65 3.65 Total: -1.00 -31.46 241.91 -4.51 -35.97 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -3.07 Total: 8.35 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.68 Total: -10.61 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.62 Total: -52.98 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: 0.06 Total: -3.78 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.46 -4.51 -35.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622651.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.915 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds