Wall clock time and date at job start Mon Mar 30 2020 02:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34324 * 126.17046 * 2 1 4 4 O 1.34745 * 107.11678 * 179.80766 * 3 2 1 5 5 C 1.33973 * 107.75736 * 0.36701 * 4 3 2 6 6 C 1.50697 * 125.62108 * 179.89696 * 5 4 3 7 7 H 1.09002 * 109.46822 * 194.68620 * 6 5 4 8 8 N 1.46904 * 109.47123 * 314.68488 * 6 5 4 9 9 C 1.53002 * 109.47354 * 74.68659 * 6 5 4 10 10 C 1.50696 * 109.46919 * 174.99865 * 9 6 5 11 11 H 1.07999 * 120.00202 * 359.97438 * 10 9 6 12 12 C 1.37884 * 119.99746 * 180.02562 * 10 9 6 13 13 N 1.31514 * 119.99573 * 0.27650 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47035 * 60.00183 * 14 12 10 16 16 H 1.48503 * 109.46845 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47237 * 299.99939 * 14 12 10 18 18 N 1.30258 * 108.75638 * 359.62558 * 5 4 3 19 19 H 1.08997 * 109.47569 * 269.95834 * 1 2 3 20 20 H 1.09001 * 109.46816 * 29.95889 * 1 2 3 21 21 H 1.09003 * 109.46964 * 149.95417 * 1 2 3 22 22 H 1.08005 * 126.43993 * 0.05899 * 3 2 1 23 23 H 1.00904 * 110.99623 * 60.00262 * 8 6 5 24 24 H 1.00900 * 111.00058 * 183.95379 * 8 6 5 25 25 H 1.09000 * 109.46497 * 55.00130 * 9 6 5 26 26 H 1.08999 * 109.46623 * 295.00194 * 9 6 5 27 27 H 0.97001 * 120.00651 * 359.71956 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2997 1.0843 0.0000 4 8 3.5734 0.6445 0.0043 5 6 3.5431 -0.6949 -0.0013 6 6 4.7479 -1.6001 -0.0014 7 1 4.4420 -2.6120 -0.2670 8 7 5.7274 -1.1115 -0.9812 9 6 5.3804 -1.6076 1.3918 10 6 6.5095 -2.6050 1.4254 11 1 6.7516 -3.1767 0.5417 12 6 7.2330 -2.7884 2.5848 13 7 6.9339 -2.0969 3.6627 14 14 8.6322 -4.0253 2.6267 15 1 9.6569 -3.6477 1.6204 16 1 9.2461 -4.0325 3.9789 17 1 8.1063 -5.3785 2.3141 18 7 2.3005 -1.0858 -0.0008 19 1 -0.3634 -0.0007 1.0276 20 1 -0.3633 0.8904 -0.5132 21 1 -0.3633 -0.8896 -0.5146 22 1 1.9769 2.1150 0.0009 23 1 6.0268 -0.1744 -0.7567 24 1 6.5163 -1.7371 -1.0467 25 1 4.6284 -1.8849 2.1305 26 1 5.7660 -0.6142 1.6210 27 1 6.2072 -1.4549 3.6411 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260622651.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:20 Heat of formation + Delta-G solvation = -24.682063 kcal Electronic energy + Delta-G solvation = -12099.317055 eV Core-core repulsion = 9856.949838 eV Total energy + Delta-G solvation = -2242.367217 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -44.34186 -37.73443 -36.17214 -34.76806 -32.32717 -29.83692 -28.34983 -26.41395 -24.15914 -22.63042 -21.38843 -19.16526 -18.19497 -17.64822 -16.94589 -16.01108 -15.69937 -15.29037 -15.06581 -14.42565 -14.16202 -14.08961 -13.51536 -13.13664 -12.98806 -12.67546 -12.37457 -11.97376 -11.91615 -11.60881 -10.87798 -10.62380 -9.96176 -9.56846 -8.75217 -6.48568 0.45406 1.54654 1.60827 1.62746 1.81183 1.81544 2.54606 2.89943 3.10853 3.77323 3.85290 4.00205 4.22022 4.34459 4.60334 4.75598 4.82425 4.92495 4.93748 5.01852 5.13670 5.39356 5.78904 5.98760 6.08166 6.43445 6.45403 6.75069 7.35338 8.64819 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.066452 B = 0.008103 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.257921 B = 3454.718281 C = 3571.000707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.044 4.044 3 C -0.085 4.085 4 O -0.211 6.211 5 C 0.202 3.798 6 C 0.204 3.796 7 H 0.104 0.896 8 N -0.823 5.823 9 C -0.006 4.006 10 C -0.613 4.613 11 H 0.069 0.931 12 C -0.035 4.035 13 N -0.935 5.935 14 Si 1.122 2.878 15 H -0.262 1.262 16 H -0.289 1.289 17 H -0.269 1.269 18 N -0.517 5.517 19 H 0.081 0.919 20 H 0.107 0.893 21 H 0.069 0.931 22 H 0.260 0.740 23 H 0.341 0.659 24 H 0.362 0.638 25 H -0.016 1.016 26 H -0.005 1.005 27 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.733 5.375 -7.829 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.163 4.163 3 C -0.155 4.155 4 O -0.097 6.097 5 C -0.005 4.005 6 C 0.091 3.909 7 H 0.122 0.878 8 N -0.354 5.354 9 C -0.046 4.046 10 C -0.650 4.650 11 H 0.087 0.913 12 C -0.233 4.233 13 N -0.571 5.571 14 Si 0.942 3.058 15 H -0.186 1.186 16 H -0.215 1.215 17 H -0.194 1.194 18 N -0.248 5.248 19 H 0.100 0.900 20 H 0.125 0.875 21 H 0.088 0.912 22 H 0.276 0.724 23 H 0.153 0.847 24 H 0.177 0.823 25 H 0.002 0.998 26 H 0.013 0.987 27 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.321 4.036 -7.422 11.180 hybrid contribution -0.528 1.552 0.261 1.659 sum -7.849 5.588 -7.162 12.005 Atomic orbital electron populations 1.20212 0.83604 1.04561 1.03684 1.22615 1.00101 0.87811 1.05769 1.25682 0.79170 1.02638 1.07965 1.84421 1.32165 1.23732 1.69365 1.26514 0.95425 0.79582 0.99023 1.19617 0.85169 0.93583 0.92542 0.87814 1.59088 1.19447 1.08005 1.48840 1.19855 0.95510 0.96380 0.92816 1.22249 1.17328 1.24571 1.00854 0.91326 1.27512 1.03385 1.00622 0.91768 1.70927 1.30399 1.24824 1.30986 0.82875 0.72789 0.73677 0.76430 1.18628 1.21460 1.19399 1.70311 1.01014 1.33234 1.20284 0.90036 0.87455 0.91170 0.72436 0.84699 0.82265 0.99814 0.98705 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.33 10.43 71.24 0.74 -0.59 15 2 C -0.04 -1.39 7.11 41.26 0.29 -1.09 15 3 C -0.09 -2.46 12.08 66.93 0.81 -1.65 15 4 O -0.21 -8.00 10.72 -3.71 -0.04 -8.04 15 5 C 0.20 8.53 7.15 88.34 0.63 9.16 15 6 C 0.20 8.94 3.30 44.17 0.15 9.09 15 7 H 0.10 4.65 8.14 -2.39 -0.02 4.63 15 8 N -0.82 -31.29 9.18 -171.79 -1.58 -32.87 15 9 C -0.01 -0.32 3.92 29.85 0.12 -0.20 15 10 C -0.61 -33.32 8.55 25.60 0.22 -33.10 15 11 H 0.07 3.49 7.15 -2.91 -0.02 3.47 15 12 C -0.04 -1.98 5.46 84.66 0.46 -1.52 15 13 N -0.93 -57.73 13.65 21.45 0.29 -57.44 15 14 Si 1.12 48.58 29.90 68.60 2.05 50.63 15 15 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 16 H -0.29 -12.77 7.11 99.48 0.71 -12.06 15 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 18 N -0.52 -21.24 11.29 -291.98 -3.30 -24.54 15 19 H 0.08 1.56 8.14 -2.39 -0.02 1.54 15 20 H 0.11 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.07 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.26 4.29 8.06 -2.91 -0.02 4.27 15 23 H 0.34 12.59 8.94 -89.69 -0.80 11.78 15 24 H 0.36 13.30 7.90 -89.69 -0.71 12.59 15 25 H -0.02 -0.96 8.00 -2.39 -0.02 -0.98 15 26 H -0.01 -0.29 8.01 -2.39 -0.02 -0.31 15 27 H 0.25 16.00 7.22 -92.71 -0.67 15.33 15 Total: -1.00 -69.26 241.91 0.63 -68.63 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: -0.22 Total: 23.53 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 3.42 Total: -19.90 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -4.58 Total: -114.85 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.04 Total: -8.04 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.05 Total: 50.63 kcal Total: -69.26 0.63 -68.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260622651.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.947 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds