Wall clock time and date at job start Mon Mar 30 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41375 * 126.80544 * 2 1 4 4 C 1.35450 * 103.98779 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.77526 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46758 * 340.00262 * 5 4 3 7 7 N 1.46899 * 109.46830 * 220.00058 * 5 4 3 8 8 C 1.53003 * 109.46959 * 100.00297 * 5 4 3 9 9 C 1.50694 * 109.46971 * 184.99962 * 8 5 4 10 10 H 1.08005 * 120.00182 * 359.97438 * 9 8 5 11 11 C 1.37883 * 119.99878 * 180.02562 * 9 8 5 12 12 N 1.31507 * 119.99916 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99792 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47360 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47069 * 119.99775 * 13 11 9 16 16 H 1.48506 * 109.46569 * 239.99763 * 13 11 9 17 17 O 1.34034 * 106.44531 * 0.02562 * 4 3 2 18 18 N 1.20925 * 111.56886 * 359.97438 * 17 4 3 19 19 H 1.09005 * 109.46758 * 269.97205 * 1 2 3 20 20 H 1.09001 * 109.46799 * 29.97065 * 1 2 3 21 21 H 1.09000 * 109.47005 * 149.97352 * 1 2 3 22 22 H 1.08002 * 128.00212 * 359.97438 * 3 2 1 23 23 H 1.00899 * 110.99277 * 176.04705 * 7 5 4 24 24 H 1.00896 * 111.00011 * 300.00307 * 7 5 4 25 25 H 1.08999 * 109.46963 * 305.00231 * 8 5 4 26 26 H 1.09001 * 109.46922 * 64.99428 * 8 5 4 27 27 H 0.97002 * 120.00457 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9023 1.3695 -0.0014 6 1 4.7266 2.3862 -0.3529 7 7 5.8610 0.7021 -0.8921 8 6 5.4697 1.4117 1.4189 9 6 6.7034 2.2767 1.4414 10 1 7.0486 2.7488 0.5334 11 6 7.3922 2.4646 2.6210 12 7 6.9721 1.8894 3.7265 13 14 8.9211 3.5375 2.6490 14 1 9.1806 4.0652 1.2855 15 1 8.7141 4.6697 3.5874 16 1 10.0842 2.7299 3.0965 17 8 3.4537 -0.7254 -0.0015 18 7 2.2868 -1.0424 -0.0010 19 1 -0.3633 -0.0005 1.0277 20 1 -0.3633 0.8903 -0.5134 21 1 -0.3633 -0.8897 -0.5142 22 1 2.0710 2.1742 -0.0004 23 1 6.7186 1.2293 -0.9601 24 1 6.0406 -0.2428 -0.5872 25 1 4.7229 1.8260 2.0963 26 1 5.7281 0.4017 1.7371 27 1 7.4564 2.0218 4.5565 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624881.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:25 Heat of formation + Delta-G solvation = 41.119786 kcal Electronic energy + Delta-G solvation = -12083.119312 eV Core-core repulsion = 9843.605478 eV Total energy + Delta-G solvation = -2239.513835 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.38357 -35.96640 -34.34857 -32.62175 -30.63879 -28.42554 -28.06940 -24.70342 -22.61655 -21.62280 -19.11638 -17.18056 -16.90599 -16.28624 -15.09409 -14.66679 -14.18388 -13.24454 -13.08039 -12.94487 -12.70274 -12.60578 -12.23368 -11.68697 -11.20142 -10.84794 -10.75306 -10.43587 -10.10242 -9.60612 -9.34578 -8.89512 -8.53802 -7.90216 -6.16444 -4.22473 2.01820 2.66426 3.22220 3.30552 3.33297 3.66636 4.32570 4.55096 4.81050 5.18753 5.36807 5.56717 5.57092 5.61186 5.75980 5.93160 6.10482 6.33209 6.41846 6.52168 7.30541 7.44009 7.75473 7.82911 8.08408 8.17982 8.75116 8.83549 9.43569 10.94376 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.067120 B = 0.008044 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.063725 B = 3479.810693 C = 3618.685399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.010 3.990 3 C -0.255 4.255 4 C 0.022 3.978 5 C 0.166 3.834 6 H 0.101 0.899 7 N -0.840 5.840 8 C -0.004 4.004 9 C -0.529 4.529 10 H 0.061 0.939 11 C 0.062 3.938 12 N -0.888 5.888 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 O 0.096 5.904 18 N -0.382 5.382 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.071 0.929 22 H 0.166 0.834 23 H 0.354 0.646 24 H 0.338 0.662 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.372 -0.557 -6.221 9.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.149 4.149 3 C -0.277 4.277 4 C -0.043 4.043 5 C 0.053 3.947 6 H 0.119 0.881 7 N -0.370 5.370 8 C -0.042 4.042 9 C -0.567 4.567 10 H 0.079 0.921 11 C -0.141 4.141 12 N -0.526 5.526 13 Si 0.724 3.276 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 O 0.033 5.967 18 N -0.089 5.089 19 H 0.095 0.905 20 H 0.096 0.904 21 H 0.090 0.910 22 H 0.184 0.816 23 H 0.168 0.832 24 H 0.149 0.851 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.088 -1.788 -6.614 10.600 hybrid contribution 1.318 1.417 1.168 2.260 sum -6.770 -0.371 -5.446 8.697 Atomic orbital electron populations 1.20082 0.86531 1.03168 1.02957 1.23492 0.98636 0.89277 1.03488 1.22272 0.91209 1.00825 1.13396 1.25044 0.98779 0.83005 0.97437 1.20319 0.84071 0.94161 0.96113 0.88125 1.59175 1.17646 1.07084 1.53078 1.19875 0.96470 0.98308 0.89591 1.21091 1.10126 1.30414 0.95108 0.92112 1.25018 0.97774 0.95756 0.95560 1.69978 1.39840 1.43236 0.99588 0.86474 0.82709 0.80220 0.78245 1.19542 1.20926 1.20929 1.84760 1.21129 1.23340 1.67444 1.73771 0.89656 1.24408 1.21077 0.90545 0.90380 0.91021 0.81635 0.83169 0.85057 0.95762 0.95822 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.47 36.01 0.38 -0.45 15 2 C 0.01 0.17 7.33 -82.10 -0.60 -0.44 15 3 C -0.25 -4.37 11.06 -39.38 -0.44 -4.80 15 4 C 0.02 0.42 6.30 -35.30 -0.22 0.19 15 5 C 0.17 3.30 3.24 -68.86 -0.22 3.08 15 6 H 0.10 1.93 8.14 -51.93 -0.42 1.50 15 7 N -0.84 -15.40 9.18 -5.65 -0.05 -15.45 15 8 C 0.00 -0.09 4.60 -27.88 -0.13 -0.22 15 9 C -0.53 -13.77 8.55 -34.44 -0.29 -14.07 15 10 H 0.06 1.50 7.14 -52.48 -0.37 1.13 15 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 15 12 N -0.89 -25.75 13.29 55.43 0.74 -25.02 15 13 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 15 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 17 O 0.10 1.93 11.14 17.19 0.19 2.12 15 18 N -0.38 -7.34 12.07 33.42 0.40 -6.93 15 19 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.08 0.75 8.14 -51.93 -0.42 0.32 15 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 15 22 H 0.17 2.39 8.06 -52.49 -0.42 1.97 15 23 H 0.35 6.36 7.90 -39.29 -0.31 6.05 15 24 H 0.34 6.13 8.93 -39.29 -0.35 5.78 15 25 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 26 H 0.02 0.63 8.14 -51.93 -0.42 0.20 15 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 LS Contribution 242.74 15.07 3.66 3.66 Total: -1.00 -29.42 242.74 -4.84 -34.26 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.13 Total: 6.91 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.63 Total: -15.13 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 1.09 Total: -47.40 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.19 Total: 2.12 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.42 -4.84 -34.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624881.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.380 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds