Wall clock time and date at job start Mon Mar 30 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41379 * 126.80093 * 2 1 4 4 C 1.35446 * 103.98652 * 180.26598 * 3 2 1 5 5 C 1.50701 * 126.77945 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46994 * 20.00081 * 5 4 3 7 7 N 1.46905 * 109.47302 * 139.99799 * 5 4 3 8 8 C 1.52998 * 109.47336 * 260.00152 * 5 4 3 9 9 C 1.50698 * 109.47009 * 174.99574 * 8 5 4 10 10 H 1.07994 * 120.00288 * 0.02562 * 9 8 5 11 11 C 1.37885 * 119.99823 * 180.02562 * 9 8 5 12 12 N 1.31509 * 119.99669 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99991 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47011 * 90.00093 * 13 11 9 15 15 H 1.48493 * 109.47195 * 210.00185 * 13 11 9 16 16 H 1.48501 * 109.47257 * 330.00232 * 13 11 9 17 17 O 1.34044 * 106.44743 * 0.02562 * 4 3 2 18 18 N 1.20918 * 111.56370 * 359.97438 * 17 4 3 19 19 H 1.09006 * 109.46991 * 269.70726 * 1 2 3 20 20 H 1.08999 * 109.47361 * 29.70128 * 1 2 3 21 21 H 1.08995 * 109.47063 * 149.70723 * 1 2 3 22 22 H 1.08001 * 128.00721 * 0.25149 * 3 2 1 23 23 H 1.00897 * 110.99613 * 296.05146 * 7 5 4 24 24 H 1.00904 * 110.99594 * 60.00070 * 7 5 4 25 25 H 1.08997 * 109.47121 * 295.00118 * 8 5 4 26 26 H 1.09000 * 109.46686 * 54.99868 * 8 5 4 27 27 H 0.97007 * 119.99755 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0061 5 6 4.9022 1.3696 -0.0083 6 1 4.7280 2.3853 0.3471 7 7 5.8646 0.6996 0.8765 8 6 5.4638 1.4163 -1.4307 9 6 6.6974 2.2815 -1.4555 10 1 7.0462 2.7508 -0.5475 11 6 7.3807 2.4740 -2.6375 12 7 8.4575 3.2287 -2.6591 13 14 6.7778 1.6618 -4.2079 14 1 5.8257 2.5674 -4.8996 15 1 7.9340 1.3859 -5.0979 16 1 6.0943 0.3862 -3.8746 17 8 3.4538 -0.7253 -0.0098 18 7 2.2869 -1.0423 -0.0062 19 1 -0.3633 -0.0053 1.0277 20 1 -0.3634 0.8926 -0.5092 21 1 -0.3633 -0.8873 -0.5184 22 1 2.0709 2.1743 0.0037 23 1 5.5459 0.7130 1.8337 24 1 6.0430 -0.2444 0.5679 25 1 5.7210 0.4074 -1.7530 26 1 4.7143 1.8328 -2.1037 27 1 8.9385 3.3638 -3.4906 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260624891.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:27 Heat of formation + Delta-G solvation = 50.139632 kcal Electronic energy + Delta-G solvation = -12132.451192 eV Core-core repulsion = 9893.328487 eV Total energy + Delta-G solvation = -2239.122705 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.63882 -36.06814 -34.57756 -32.48118 -30.70146 -29.00715 -28.56711 -24.55586 -22.83539 -21.26172 -19.29892 -17.37378 -17.14892 -16.41530 -15.45703 -14.66642 -14.09314 -13.64415 -13.38647 -13.23768 -12.92736 -12.56017 -12.44309 -11.52933 -11.42015 -10.87000 -10.53329 -10.40695 -9.83554 -9.80909 -9.21282 -8.94462 -8.51700 -8.27546 -5.99555 -3.96164 1.74268 2.42903 3.31700 3.39566 3.40406 3.43558 4.34185 4.47545 4.66477 5.11409 5.30083 5.36298 5.38804 5.41689 5.55344 5.75292 5.89704 6.00667 6.26010 6.32941 6.95925 7.17278 7.60822 7.78990 7.94927 8.50057 8.58599 9.11266 9.61674 11.13728 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049643 B = 0.009470 C = 0.008699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.890602 B = 2956.033494 C = 3218.009055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.010 3.990 3 C -0.246 4.246 4 C -0.041 4.041 5 C 0.185 3.815 6 H 0.110 0.890 7 N -0.814 5.814 8 C -0.004 4.004 9 C -0.499 4.499 10 H 0.083 0.917 11 C 0.067 3.933 12 N -0.902 5.902 13 Si 0.872 3.128 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.268 1.268 17 O 0.092 5.908 18 N -0.379 5.379 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.072 0.928 22 H 0.169 0.831 23 H 0.330 0.670 24 H 0.343 0.657 25 H 0.022 0.978 26 H 0.019 0.981 27 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.022 -4.642 5.152 14.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.149 4.149 3 C -0.269 4.269 4 C -0.107 4.107 5 C 0.071 3.929 6 H 0.127 0.873 7 N -0.341 5.341 8 C -0.042 4.042 9 C -0.537 4.537 10 H 0.102 0.898 11 C -0.134 4.134 12 N -0.541 5.541 13 Si 0.699 3.301 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.193 1.193 17 O 0.029 5.971 18 N -0.086 5.086 19 H 0.095 0.905 20 H 0.098 0.902 21 H 0.091 0.909 22 H 0.186 0.814 23 H 0.141 0.859 24 H 0.157 0.843 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.543 -5.335 4.800 14.451 hybrid contribution -1.196 -0.183 -0.809 1.455 sum -13.739 -5.518 3.992 15.334 Atomic orbital electron populations 1.20107 0.86346 1.03486 1.02959 1.23594 0.98794 0.89252 1.03212 1.22459 0.91320 1.00995 1.12095 1.26850 1.01279 0.83485 0.99117 1.20524 0.79799 0.94603 0.97942 0.87273 1.58677 1.46920 1.24061 1.04451 1.19701 0.97192 0.98275 0.89043 1.20916 1.07830 1.28266 0.96696 0.89849 1.24961 0.94852 0.94983 0.98606 1.69895 1.18185 1.38962 1.27092 0.86916 0.78500 0.80576 0.84076 1.20419 1.21318 1.19257 1.84758 1.21362 1.23340 1.67691 1.73779 0.89612 1.24423 1.20831 0.90511 0.90180 0.90885 0.81361 0.85876 0.84337 0.96017 0.96271 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.47 36.01 0.38 -0.37 15 2 C 0.01 0.16 7.33 -82.10 -0.60 -0.44 15 3 C -0.25 -3.76 11.06 -39.38 -0.44 -4.20 15 4 C -0.04 -0.70 6.29 -35.30 -0.22 -0.93 15 5 C 0.18 3.45 3.18 -68.86 -0.22 3.23 15 6 H 0.11 1.98 8.14 -51.92 -0.42 1.55 15 7 N -0.81 -14.29 8.94 -5.65 -0.05 -14.34 15 8 C 0.00 -0.10 3.67 -27.88 -0.10 -0.20 15 9 C -0.50 -13.77 9.39 -34.44 -0.32 -14.09 15 10 H 0.08 2.49 7.99 -52.49 -0.42 2.07 15 11 C 0.07 1.92 5.47 -17.82 -0.10 1.82 15 12 N -0.90 -27.59 13.96 55.43 0.77 -26.82 15 13 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 15 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 16 H -0.27 -6.49 6.54 56.52 0.37 -6.12 15 17 O 0.09 1.64 11.14 17.17 0.19 1.83 15 18 N -0.38 -6.61 12.07 33.42 0.40 -6.21 15 19 H 0.08 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.08 0.70 8.14 -51.93 -0.42 0.27 15 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 22 H 0.17 2.14 8.06 -52.49 -0.42 1.72 15 23 H 0.33 4.79 9.06 -39.29 -0.36 4.43 15 24 H 0.34 5.84 8.94 -39.29 -0.35 5.49 15 25 H 0.02 0.52 7.20 -51.93 -0.37 0.14 15 26 H 0.02 0.44 7.57 -51.93 -0.39 0.05 15 27 H 0.26 7.54 8.31 -40.82 -0.34 7.20 15 LS Contribution 240.87 15.07 3.63 3.63 Total: -1.00 -31.30 240.87 -4.52 -35.82 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.17 Total: 4.30 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -1.62 Total: -15.18 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 1.13 Total: -47.37 kcal Atomic # 8 Polarization: 1.64 SS G_CDS: 0.19 Total: 1.83 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.30 -4.52 -35.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624891.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.962 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds