Wall clock time and date at job start Mon Mar 30 2020 02:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41379 * 126.80093 * 2 1 4 4 C 1.35446 * 103.98652 * 180.26598 * 3 2 1 5 5 C 1.50701 * 126.77945 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.46994 * 20.00081 * 5 4 3 7 7 N 1.46905 * 109.47302 * 139.99799 * 5 4 3 8 8 C 1.52998 * 109.47336 * 260.00152 * 5 4 3 9 9 C 1.50698 * 109.47009 * 174.99574 * 8 5 4 10 10 H 1.07994 * 120.00288 * 0.02562 * 9 8 5 11 11 C 1.37885 * 119.99823 * 180.02562 * 9 8 5 12 12 N 1.31509 * 119.99669 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99991 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47011 * 90.00093 * 13 11 9 15 15 H 1.48493 * 109.47195 * 210.00185 * 13 11 9 16 16 H 1.48501 * 109.47257 * 330.00232 * 13 11 9 17 17 O 1.34044 * 106.44743 * 0.02562 * 4 3 2 18 18 N 1.20918 * 111.56370 * 359.97438 * 17 4 3 19 19 H 1.09006 * 109.46991 * 269.70726 * 1 2 3 20 20 H 1.08999 * 109.47361 * 29.70128 * 1 2 3 21 21 H 1.08995 * 109.47063 * 149.70723 * 1 2 3 22 22 H 1.08001 * 128.00721 * 0.25149 * 3 2 1 23 23 H 1.00897 * 110.99613 * 296.05146 * 7 5 4 24 24 H 1.00904 * 110.99594 * 60.00070 * 7 5 4 25 25 H 1.08997 * 109.47121 * 295.00118 * 8 5 4 26 26 H 1.09000 * 109.46686 * 54.99868 * 8 5 4 27 27 H 0.97007 * 119.99755 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0061 5 6 4.9022 1.3696 -0.0083 6 1 4.7280 2.3853 0.3471 7 7 5.8646 0.6996 0.8765 8 6 5.4638 1.4163 -1.4307 9 6 6.6974 2.2815 -1.4555 10 1 7.0462 2.7508 -0.5475 11 6 7.3807 2.4740 -2.6375 12 7 8.4575 3.2287 -2.6591 13 14 6.7778 1.6618 -4.2079 14 1 5.8257 2.5674 -4.8996 15 1 7.9340 1.3859 -5.0979 16 1 6.0943 0.3862 -3.8746 17 8 3.4538 -0.7253 -0.0098 18 7 2.2869 -1.0423 -0.0062 19 1 -0.3633 -0.0053 1.0277 20 1 -0.3634 0.8926 -0.5092 21 1 -0.3633 -0.8873 -0.5184 22 1 2.0709 2.1743 0.0037 23 1 5.5459 0.7130 1.8337 24 1 6.0430 -0.2444 0.5679 25 1 5.7210 0.4074 -1.7530 26 1 4.7143 1.8328 -2.1037 27 1 8.9385 3.3638 -3.4906 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260624891.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:27 Heat of formation + Delta-G solvation = 27.167788 kcal Electronic energy + Delta-G solvation = -12133.447326 eV Core-core repulsion = 9893.328487 eV Total energy + Delta-G solvation = -2240.118839 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.87387 -37.62151 -35.71458 -34.57133 -32.00149 -30.85847 -29.54635 -26.29909 -24.05797 -22.98770 -20.61659 -19.07496 -18.53311 -17.98027 -16.99564 -16.24856 -15.80251 -15.19247 -14.55084 -14.46261 -14.18982 -13.98394 -13.56864 -13.36900 -13.06337 -12.40325 -12.25744 -12.08265 -11.74640 -11.33897 -10.96585 -10.71144 -10.32850 -9.66706 -8.20357 -6.20957 0.45908 1.27349 1.36075 1.39389 1.48853 2.10992 2.39560 3.13390 3.29677 3.48426 3.80248 4.08169 4.30454 4.37156 4.55238 4.67558 4.68755 4.87599 4.91598 5.09815 5.26466 5.37217 5.66115 6.22587 6.40910 6.66530 6.88076 7.25831 7.40355 8.96271 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.049643 B = 0.009470 C = 0.008699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.890602 B = 2956.033494 C = 3218.009055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.015 3.985 3 C -0.237 4.237 4 C -0.057 4.057 5 C 0.196 3.804 6 H 0.114 0.886 7 N -0.827 5.827 8 C -0.002 4.002 9 C -0.496 4.496 10 H 0.048 0.952 11 C 0.006 3.994 12 N -0.950 5.950 13 Si 0.938 3.062 14 H -0.267 1.267 15 H -0.287 1.287 16 H -0.258 1.258 17 O 0.072 5.928 18 N -0.403 5.403 19 H 0.096 0.904 20 H 0.102 0.898 21 H 0.076 0.924 22 H 0.195 0.805 23 H 0.347 0.653 24 H 0.345 0.655 25 H 0.015 0.985 26 H 0.025 0.975 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.367 -5.077 4.898 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.144 4.144 3 C -0.259 4.259 4 C -0.122 4.122 5 C 0.083 3.917 6 H 0.132 0.868 7 N -0.356 5.356 8 C -0.040 4.040 9 C -0.534 4.534 10 H 0.067 0.933 11 C -0.190 4.190 12 N -0.592 5.592 13 Si 0.763 3.237 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.182 1.182 17 O 0.012 5.988 18 N -0.114 5.114 19 H 0.114 0.886 20 H 0.121 0.879 21 H 0.095 0.905 22 H 0.213 0.787 23 H 0.161 0.839 24 H 0.159 0.841 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.890 -5.772 4.569 16.610 hybrid contribution -0.501 -0.024 -0.631 0.806 sum -15.391 -5.796 3.938 16.911 Atomic orbital electron populations 1.20333 0.83133 1.04846 1.04629 1.24324 1.00753 0.88374 1.00972 1.22877 0.90476 1.02384 1.10129 1.26504 1.01144 0.83613 1.00985 1.20111 0.80669 0.95449 0.95514 0.86838 1.58621 1.47205 1.24200 1.05559 1.19589 0.95477 0.96596 0.92302 1.21150 1.09108 1.27929 0.95255 0.93348 1.25821 0.95051 0.95781 1.02350 1.70045 1.19945 1.41097 1.28125 0.85850 0.78122 0.79998 0.79753 1.19164 1.21282 1.18174 1.84733 1.21907 1.23589 1.68610 1.73788 0.89717 1.25604 1.22304 0.88554 0.87909 0.90468 0.78738 0.83910 0.84132 0.96673 0.95658 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.24 10.47 71.24 0.75 -0.49 15 2 C 0.01 0.41 7.33 43.58 0.32 0.73 15 3 C -0.24 -6.53 11.06 22.40 0.25 -6.28 15 4 C -0.06 -1.84 6.29 25.04 0.16 -1.68 15 5 C 0.20 7.13 3.18 44.17 0.14 7.27 15 6 H 0.11 3.99 8.14 -2.38 -0.02 3.97 15 7 N -0.83 -28.66 8.94 -171.79 -1.54 -30.20 15 8 C 0.00 -0.08 3.67 29.85 0.11 0.03 15 9 C -0.50 -27.63 9.39 25.60 0.24 -27.39 15 10 H 0.05 2.97 7.99 -2.91 -0.02 2.95 15 11 C 0.01 0.36 5.47 84.66 0.46 0.82 15 12 N -0.95 -59.26 13.96 21.45 0.30 -58.96 15 13 Si 0.94 44.42 27.47 68.60 1.88 46.30 15 14 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 15 H -0.29 -13.48 7.11 99.48 0.71 -12.77 15 16 H -0.26 -11.66 6.54 99.48 0.65 -11.01 15 17 O 0.07 2.48 11.14 71.60 0.80 3.28 15 18 N -0.40 -13.36 12.07 -49.55 -0.60 -13.95 15 19 H 0.10 1.32 8.14 -2.38 -0.02 1.30 15 20 H 0.10 1.32 8.14 -2.39 -0.02 1.30 15 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 15 22 H 0.20 4.18 8.06 -2.91 -0.02 4.16 15 23 H 0.35 9.81 9.06 -89.70 -0.81 9.00 15 24 H 0.35 11.67 8.94 -89.69 -0.80 10.87 15 25 H 0.01 0.70 7.20 -2.39 -0.02 0.68 15 26 H 0.03 1.12 7.57 -2.39 -0.02 1.10 15 27 H 0.26 15.43 8.31 -92.70 -0.77 14.66 15 Total: -1.00 -67.21 240.87 2.79 -64.42 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -0.48 Total: 16.11 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 2.42 Total: -27.00 kcal Atomic # 7 Polarization: -101.27 SS G_CDS: -1.83 Total: -103.11 kcal Atomic # 8 Polarization: 2.48 SS G_CDS: 0.80 Total: 3.28 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -67.21 2.79 -64.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260624891.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.586 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds