Wall clock time and date at job start Mon Mar 30 2020 02:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47047 * 2 1 4 4 C 1.50702 * 109.46866 * 179.97438 * 3 2 1 5 5 N 1.31132 * 126.54846 * 90.24873 * 4 3 2 6 6 C 1.34495 * 105.61329 * 180.11606 * 5 4 3 7 7 C 1.50702 * 126.28891 * 179.89922 * 6 5 4 8 8 C 1.50696 * 109.47168 * 269.72026 * 7 6 5 9 9 H 1.07999 * 120.00202 * 359.97438 * 8 7 6 10 10 C 1.37884 * 119.99746 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99573 * 0.27650 * 10 8 7 12 12 Si 1.86800 * 119.99781 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47035 * 60.00183 * 12 10 8 14 14 H 1.48503 * 109.46845 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47237 * 299.99939 * 12 10 8 16 16 N 1.29953 * 107.42369 * 359.64713 * 6 5 4 17 17 O 1.21301 * 110.25042 * 0.21849 * 16 6 5 18 18 H 1.08996 * 109.46897 * 180.02562 * 1 2 3 19 19 H 1.09011 * 109.47043 * 300.00369 * 1 2 3 20 20 H 1.09001 * 109.47203 * 60.00035 * 1 2 3 21 21 H 1.08994 * 109.47056 * 239.99484 * 2 1 3 22 22 H 1.09000 * 109.46613 * 119.99486 * 2 1 3 23 23 H 1.08999 * 109.47189 * 59.99659 * 3 2 1 24 24 H 1.08997 * 109.46722 * 299.99698 * 3 2 1 25 25 H 1.09000 * 109.46490 * 149.72144 * 7 6 5 26 26 H 1.08999 * 109.46382 * 29.72360 * 7 6 5 27 27 H 0.97001 * 120.00651 * 359.71956 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3284 1.4469 -1.0525 6 6 5.5843 1.4422 -0.5714 7 6 6.8518 1.4424 -1.3867 8 6 7.2748 0.0216 -1.6580 9 1 6.6851 -0.7993 -1.2777 10 6 8.4153 -0.2301 -2.3908 11 7 9.1368 0.7697 -2.8484 12 14 8.9400 -1.9912 -2.7265 13 1 7.8683 -2.6922 -3.4784 14 1 10.1888 -1.9909 -3.5300 15 1 9.1796 -2.6904 -1.4385 16 7 5.5042 1.4430 0.7257 17 8 4.3425 1.4432 1.0745 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8933 -0.5139 -0.8899 22 1 1.8933 -0.5138 0.8901 23 1 1.6766 1.9564 0.8899 24 1 1.6767 1.9563 -0.8900 25 1 7.6386 1.9567 -0.8349 26 1 6.6756 1.9559 -2.3319 27 1 8.8645 1.6842 -2.6739 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260815922.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:48 Heat of formation + Delta-G solvation = 14.361529 kcal Electronic energy + Delta-G solvation = -11913.452203 eV Core-core repulsion = 9672.778043 eV Total energy + Delta-G solvation = -2240.674160 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.61052 -37.39766 -36.65724 -35.36901 -33.21763 -30.42583 -28.56904 -26.00125 -24.51071 -23.11616 -21.90635 -19.42534 -18.97392 -18.31605 -16.46776 -16.10367 -15.73030 -15.57446 -14.45718 -14.37543 -14.08239 -13.66925 -13.00917 -12.87291 -12.83667 -12.58174 -12.52512 -12.17763 -12.05315 -11.94410 -11.62360 -11.26969 -10.70079 -10.62118 -8.85102 -6.58023 0.22248 1.25189 1.49260 1.56965 1.78207 1.95525 2.48847 2.76947 2.99185 3.21328 3.98517 3.99422 4.06996 4.44475 4.60037 4.65107 4.71818 4.79131 4.92397 4.95309 5.14108 5.22919 5.28655 5.46194 5.63817 5.91613 6.34303 7.20264 7.28735 8.55938 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.047381 B = 0.008159 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.810361 B = 3431.096866 C = 3766.758169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C -0.018 4.018 4 C 0.175 3.825 5 N -0.508 5.508 6 C 0.190 3.810 7 C 0.093 3.907 8 C -0.613 4.613 9 H 0.039 0.961 10 C -0.025 4.025 11 N -0.922 5.922 12 Si 1.123 2.877 13 H -0.268 1.268 14 H -0.273 1.273 15 H -0.271 1.271 16 N -0.418 5.418 17 O 0.075 5.925 18 H 0.062 0.938 19 H 0.075 0.925 20 H 0.065 0.935 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.136 0.864 24 H 0.122 0.878 25 H 0.021 0.979 26 H 0.029 0.971 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 -0.785 5.936 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.056 4.056 4 C -0.045 4.045 5 N -0.242 5.242 6 C -0.082 4.082 7 C 0.055 3.945 8 C -0.651 4.651 9 H 0.058 0.942 10 C -0.223 4.223 11 N -0.558 5.558 12 Si 0.942 3.058 13 H -0.193 1.193 14 H -0.197 1.197 15 H -0.196 1.196 16 N -0.127 5.127 17 O 0.017 5.983 18 H 0.081 0.919 19 H 0.094 0.906 20 H 0.084 0.916 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.154 0.846 24 H 0.140 0.860 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.115 -1.653 5.291 16.099 hybrid contribution -0.852 1.240 0.704 1.661 sum -15.967 -0.413 5.996 17.060 Atomic orbital electron populations 1.21706 0.91986 1.02916 1.03356 1.21550 0.98503 0.93700 1.02360 1.20664 0.76080 1.00819 1.08062 1.29983 1.00239 0.94336 0.79927 1.71849 1.00396 1.21541 1.30414 1.26129 0.95933 0.97980 0.88201 1.17596 0.85564 0.98739 0.92651 1.21956 1.13167 0.90916 1.39097 0.94248 1.27532 0.92712 1.09874 0.92222 1.70914 1.40158 1.00215 1.44507 0.82876 0.76763 0.68673 0.77452 1.19316 1.19741 1.19605 1.74568 0.98191 1.23879 1.16073 1.85178 1.11025 1.66082 1.35999 0.91864 0.90559 0.91607 0.93189 0.91497 0.84555 0.86032 0.96060 0.95327 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.91 71.98 0.71 -0.94 15 2 C -0.12 -2.23 5.92 30.60 0.18 -2.05 15 3 C -0.02 -0.34 5.84 29.85 0.17 -0.16 15 4 C 0.18 5.92 7.77 88.38 0.69 6.61 15 5 N -0.51 -22.59 11.55 -303.17 -3.50 -26.10 15 6 C 0.19 9.66 7.41 138.46 1.03 10.69 15 7 C 0.09 5.33 4.91 29.10 0.14 5.48 15 8 C -0.61 -37.31 9.09 25.60 0.23 -37.08 15 9 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 10 C -0.02 -1.46 5.46 84.66 0.46 -0.99 15 11 N -0.92 -57.48 13.65 21.45 0.29 -57.19 15 12 Si 1.12 51.30 29.90 68.60 2.05 53.35 15 13 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 14 H -0.27 -12.09 7.11 99.48 0.71 -11.39 15 15 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 16 N -0.42 -19.81 12.16 -60.30 -0.73 -20.54 15 17 O 0.07 2.86 11.31 74.86 0.85 3.70 15 18 H 0.06 0.72 8.14 -2.39 -0.02 0.70 15 19 H 0.08 0.64 8.14 -2.38 -0.02 0.62 15 20 H 0.06 0.69 8.14 -2.39 -0.02 0.67 15 21 H 0.05 1.15 8.14 -2.39 -0.02 1.13 15 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 15 23 H 0.14 1.60 8.14 -2.39 -0.02 1.58 15 24 H 0.12 2.01 8.14 -2.39 -0.02 2.00 15 25 H 0.02 1.26 8.00 -2.39 -0.02 1.24 15 26 H 0.03 1.68 8.01 -2.39 -0.02 1.66 15 27 H 0.26 16.23 7.22 -92.71 -0.67 15.56 15 Total: -1.00 -73.27 244.17 3.83 -69.44 By element: Atomic # 1 Polarization: -5.48 SS G_CDS: 1.25 Total: -4.22 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 3.62 Total: -18.45 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.94 Total: -103.82 kcal Atomic # 8 Polarization: 2.86 SS G_CDS: 0.85 Total: 3.70 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -73.27 3.83 -69.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260815922.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.799 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds