Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38700 * 125.97895 * 2 1 4 4 C 1.32871 * 107.91151 * 180.14950 * 3 2 1 5 5 C 1.50698 * 126.04050 * 179.85139 * 4 3 2 6 6 C 1.50694 * 109.47166 * 94.68702 * 5 4 3 7 7 H 1.08000 * 120.00563 * 359.97438 * 6 5 4 8 8 C 1.37885 * 119.99902 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99792 * 179.72330 * 8 6 5 10 10 Si 1.86795 * 120.00009 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47088 * 89.99795 * 10 8 6 12 12 H 1.48495 * 109.47293 * 209.99997 * 10 8 6 13 13 H 1.48507 * 109.47015 * 329.99955 * 10 8 6 14 14 N 1.38697 * 107.91123 * 359.58374 * 4 3 2 15 15 C 1.46498 * 125.97783 * 180.26698 * 14 4 3 16 16 C 1.34752 * 108.03647 * 0.26671 * 14 4 3 17 17 O 1.21795 * 125.94809 * 179.97438 * 16 14 4 18 18 H 1.09010 * 109.46915 * 180.29525 * 1 2 3 19 19 H 1.09001 * 109.47160 * 300.29344 * 1 2 3 20 20 H 1.09000 * 109.47550 * 60.29707 * 1 2 3 21 21 H 1.08000 * 126.04699 * 0.02981 * 3 2 1 22 22 H 1.08998 * 109.46890 * 334.68692 * 5 4 3 23 23 H 1.09002 * 109.46875 * 214.68495 * 5 4 3 24 24 H 0.97000 * 119.99468 * 179.97438 * 9 8 6 25 25 H 1.09003 * 109.47312 * 89.99939 * 15 14 4 26 26 H 1.09000 * 109.46881 * 209.99844 * 15 14 4 27 27 H 1.09001 * 109.47368 * 330.00107 * 15 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2798 1.1224 0.0000 4 6 3.5430 0.7103 -0.0033 5 6 4.7639 1.5938 -0.0077 6 6 5.2430 1.7956 1.4067 7 1 4.7160 1.3309 2.2270 8 6 6.3543 2.5735 1.6538 9 7 6.7693 2.7540 2.8887 10 14 7.2655 3.3777 0.2353 11 1 6.6896 4.7216 -0.0245 12 1 8.7026 3.5139 0.5838 13 1 7.1287 2.5370 -0.9811 14 7 3.5393 -0.6766 0.0042 15 6 4.7225 -1.5405 0.0092 16 6 2.2569 -1.0904 0.0060 17 8 1.8791 -2.2483 0.0117 18 1 -0.3633 -1.0278 0.0053 19 1 -0.3633 0.5184 0.8873 20 1 -0.3634 0.5092 -0.8926 21 1 1.9466 2.1497 0.0005 22 1 4.5123 2.5590 -0.4472 23 1 5.5519 1.1216 -0.5944 24 1 7.5513 3.3009 3.0624 25 1 5.0157 -1.7492 1.0381 26 1 4.4912 -2.4762 -0.4997 27 1 5.5409 -1.0387 -0.5071 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260921588.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = 13.931783 kcal Electronic energy + Delta-G solvation = -12331.863510 eV Core-core repulsion = 10091.170715 eV Total energy + Delta-G solvation = -2240.692795 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 196.095 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.63120 -36.35044 -34.94975 -33.09063 -30.79048 -29.29099 -26.16171 -25.36291 -22.70581 -20.36279 -19.62316 -16.97044 -16.65222 -15.92436 -14.92146 -14.67282 -14.26823 -13.67242 -13.48364 -12.94466 -12.50543 -12.33219 -12.13480 -11.85118 -11.73705 -11.13375 -10.74217 -10.40649 -10.02274 -9.79060 -9.48186 -9.12698 -8.68140 -6.94244 -6.16262 -4.17250 2.84934 2.98591 3.21824 3.30693 3.30848 3.44304 4.06234 4.32136 5.12405 5.18397 5.49720 5.52390 5.72223 5.79531 5.84857 5.95338 6.11838 6.27072 6.51450 6.81142 7.01747 7.04937 7.46241 7.60721 8.04029 8.39019 8.86807 8.89010 9.42230 10.96428 Molecular weight = 196.10amu Principal moments of inertia in cm(-1) A = 0.052225 B = 0.010161 C = 0.009567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.013541 B = 2754.986547 C = 2926.125037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.540 5.540 3 C -0.058 4.058 4 C 0.084 3.916 5 C 0.048 3.952 6 C -0.519 4.519 7 H 0.074 0.926 8 C 0.072 3.928 9 N -0.896 5.896 10 Si 0.877 3.123 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.265 1.265 14 N -0.528 5.528 15 C 0.107 3.893 16 C 0.642 3.358 17 O -0.597 6.597 18 H 0.083 0.917 19 H 0.067 0.933 20 H 0.066 0.934 21 H 0.175 0.825 22 H 0.040 0.960 23 H 0.031 0.969 24 H 0.266 0.734 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.561 -1.844 -7.273 9.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.261 5.261 3 C -0.178 4.178 4 C -0.021 4.021 5 C 0.010 3.990 6 C -0.557 4.557 7 H 0.092 0.908 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.704 3.296 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.189 1.189 14 N -0.247 5.247 15 C -0.035 4.035 16 C 0.345 3.655 17 O -0.478 6.478 18 H 0.102 0.898 19 H 0.086 0.914 20 H 0.085 0.915 21 H 0.192 0.808 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.694 -2.596 -7.155 10.136 hybrid contribution 0.557 0.628 -0.461 0.958 sum -6.137 -1.968 -7.616 9.977 Atomic orbital electron populations 1.21566 0.76383 1.03804 1.01960 1.45001 1.06664 1.06392 1.68008 1.21314 0.87889 0.92216 1.16379 1.20801 0.96756 0.82104 1.02410 1.18350 0.88826 0.92763 0.99095 1.20894 1.12417 1.31660 0.90715 0.90770 1.24979 0.96739 0.95793 0.95533 1.69897 1.25223 1.39207 1.19050 0.86825 0.79340 0.80375 0.83083 1.19972 1.21173 1.18921 1.45183 1.06391 1.06868 1.66216 1.21596 0.85356 0.93355 1.03177 1.16182 0.81249 0.84738 0.83343 1.90943 1.77741 1.16359 1.62805 0.89804 0.91424 0.91543 0.80805 0.94160 0.95051 0.92452 0.91331 0.90865 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.37 11.20 59.85 0.67 2.04 15 2 N -0.54 -9.73 3.18 -128.84 -0.41 -10.14 15 3 C -0.06 -1.05 11.39 -16.29 -0.19 -1.24 15 4 C 0.08 1.73 6.10 -81.33 -0.50 1.24 15 5 C 0.05 1.06 4.24 -29.04 -0.12 0.93 15 6 C -0.52 -13.85 9.65 -34.44 -0.33 -14.18 15 7 H 0.07 2.22 7.98 -52.49 -0.42 1.80 15 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 9 N -0.90 -26.34 13.96 55.43 0.77 -25.56 15 10 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 15 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 13 H -0.26 -5.70 6.54 56.52 0.37 -5.33 15 14 N -0.53 -10.79 3.18 -124.23 -0.39 -11.19 15 15 C 0.11 1.87 10.89 59.85 0.65 2.52 15 16 C 0.64 13.51 8.52 -86.96 -0.74 12.77 15 17 O -0.60 -13.81 17.40 5.10 0.09 -13.73 15 18 H 0.08 1.10 7.73 -51.92 -0.40 0.70 15 19 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.17 2.64 8.06 -52.49 -0.42 2.22 15 22 H 0.04 0.84 7.57 -51.93 -0.39 0.45 15 23 H 0.03 0.68 6.39 -51.93 -0.33 0.35 15 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 15 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 26 H 0.07 1.15 8.07 -51.93 -0.42 0.73 15 27 H 0.08 1.35 7.25 -51.93 -0.38 0.97 15 LS Contribution 239.18 15.07 3.60 3.60 Total: -1.00 -32.52 239.18 -4.86 -37.38 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.20 Total: -1.64 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.65 Total: 5.94 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.03 Total: -46.88 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.52 -4.86 -37.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260921588.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.309 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds